Complex 8ogj
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.10 |
| System mass | 3126.10 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Candida |
| RCSB PDB Entry | 8ogj |
| Reference | Kolosova Olga, Zgadzay Yury, Stetsenko Artem, Sukhinina Anastasia P., Atamas Anastasia, Validov Shamil, Rogachev Andrey, Usachev Konstantin, Jenner Lasse, Dmitriev Sergey E., Yusupova Gulnara, Guskov Albert, Yusupov Marat. . Mechanism of read-through enhancement by aminoglycosides and mefloquine Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_22526.9,
NR_all_58155.3
BGSU version: 4.49 |
| Compound | SPK |
| Residue | . / 3402 |
| Chain | CC / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1: rRNA |
| RNA family global | rRNA |
| Volume | 400.62 Å3 |
| Hydrophobicity | 0.060 |
| Hydrophilicity | 1.410 |
| Buriedness | 0.655 |
| Don/acc character | 1.261 |
| SiteScore | 1.121 |
| D Score | 0.873 |
| Kd | — |
| Compound | YMZ |
| Residue | . / 3401 |
| Chain | BC / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/1: rRNA |
| RNA family global | rRNA |
| Volume | 246.27 Å3 |
| Hydrophobicity | 0.475 |
| Hydrophilicity | 0.873 |
| Buriedness | 0.683 |
| Don/acc character | 2.432 |
| SiteScore | 0.897 |
| D Score | 0.712 |
| Kd | — |
| Compound | YMZ |
| Residue | . / 301 |
| Chain | BQ / j |
| Non-redundant | True |
| Interacting RNA chains | TA/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | TA/A: rRNA |
| RNA family global | rRNA |
| Volume | 405.43 Å3 |
| Hydrophobicity | 0.540 |
| Hydrophilicity | 1.108 |
| Buriedness | 0.744 |
| Don/acc character | 2.403 |
| SiteScore | 1.001 |
| D Score | 0.987 |
| Kd | — |