HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8k2a

System information

Experimental technique Electron Microscopy
Experimental resolution 2.90
System mass 2889.20 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 2
Organism Homo
RCSB PDB Entry 8k2a
Reference Li Xiang, Wang Mengjiao, Denk Timo, Buschauer Robert, Li Yi, Beckmann Roland, Cheng Jingdong. . Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline Nature Communications

Compound T1C
Residue . / 1706
Chain GG / L1
Non-redundant True
Interacting RNA chains A/L1
Volume 1111.32 Å3
Hydrophobicity 0.296
Hydrophilicity 1.031
Buriedness 0.696
Don/acc character 1.959
SiteScore 1.001
D Score 1.021

Compound T1C
Residue . / 1707
Chain HG / L1
Non-redundant True
Interacting RNA chains A/L1
Volume 559.43 Å3
Hydrophobicity 0.248
Hydrophilicity 1.046
Buriedness 0.676
Don/acc character 2.116
SiteScore 0.985
D Score 1.004

Compound T1C
Residue . / 1034
Chain EI / S1
Non-redundant True
Interacting RNA chains EC/S1
Volume 155.04 Å3
Hydrophobicity 0.290
Hydrophilicity 1.147
Buriedness 0.653
Don/acc character 1.427
SiteScore 0.645
D Score 0.541