HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8k2a

System information

Experimental technique Electron Microscopy
Experimental resolution 2.90
System mass 2889.20 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 8k2a
Reference Li Xiang, Wang Mengjiao, Denk Timo, Buschauer Robert, Li Yi, Beckmann Roland, Cheng Jingdong. . Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline Nature Communications

Compound T1C
Residue . / 1706
Chain GG / L1
Non-redundant True
Interacting RNA chains A/L1
Volume 362.55 Å3
Hydrophobicity 0.724
Hydrophilicity 0.819
Buriedness 0.699
Don/acc character 4.299
SiteScore 1.193
D Score 1.093

Compound T1C
Residue . / 1707
Chain HG / L1
Non-redundant True
Interacting RNA chains A/L1
Volume 597.85 Å3
Hydrophobicity 0.272
Hydrophilicity 0.989
Buriedness 0.697
Don/acc character 2.310
SiteScore 1.160
D Score 1.036

Compound T1C
Residue . / 1034
Chain EI / S1
Non-redundant True
Interacting RNA chains EC/S1
Volume 182.13 Å3
Hydrophobicity 0.215
Hydrophilicity 1.114
Buriedness 0.735
Don/acc character 1.542
SiteScore 0.749
D Score 0.716

Compound T1C
Residue . / 1035
Chain FI / S1
Non-redundant True
Interacting RNA chains EC/S1
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -