HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8ifb

System information

Experimental technique Electron Microscopy
Experimental resolution 2.43
System mass 2211.26 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 6
Organism Escherichia
RCSB PDB Entry 8ifb
Reference Tomono Junta, Asano Kosuke, Chiashi Takuma, Suzuki Masato, Igarashi Masayuki, Takahashi Yoshiaki, Tanaka Yoshikazu, Yokoyama Takeshi. . Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside The Journal of Biochemistry

Compound 84D
Residue . / 1738
Chain KG / A
Non-redundant True
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 1739
Chain LG / A
Non-redundant True
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 3255
Chain RQ / a
Non-redundant True
Interacting RNA chains A/A, V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 3256
Chain SQ / a
Non-redundant True
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 3257
Chain TQ / a
Non-redundant True
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 3258
Chain UQ / a
Non-redundant True
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 3260
Chain WQ / a
Non-redundant True
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 3261
Chain XQ / a
Non-redundant True
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 3262
Chain YQ / a
Non-redundant True
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 3180
Chain UN / a
Non-redundant False
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -