Complex 8ifb
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.43 |
| System mass | 2211.26 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 6 |
| Organism | Escherichia |
| RCSB PDB Entry | 8ifb |
| Reference | Tomono Junta, Asano Kosuke, Chiashi Takuma, Suzuki Masato, Igarashi Masayuki, Takahashi Yoshiaki, Tanaka Yoshikazu, Yokoyama Takeshi. . Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside The Journal of Biochemistry |
| Compound | 84D |
| Residue | . / 1738 |
| Chain | KG / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| Volume | 232.90 Å3 |
| Hydrophobicity | 0.094 |
| Hydrophilicity | 0.997 |
| Buriedness | 0.684 |
| Don/acc character | 3.764 |
| SiteScore | 0.843 |
| D Score | 0.826 |
| Compound | 84D |
| Residue | . / 1739 |
| Chain | LG / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Compound | 84D |
| Residue | . / 3255 |
| Chain | RQ / a |
| Non-redundant | True |
| Interacting RNA chains | A/A, V/a |
| Volume | 217.46 Å3 |
| Hydrophobicity | 0.335 |
| Hydrophilicity | 1.050 |
| Buriedness | 0.702 |
| Don/acc character | 2.654 |
| SiteScore | 0.933 |
| D Score | 0.930 |
| Compound | 84D |
| Residue | . / 3256 |
| Chain | SQ / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| Volume | 89.18 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 0.824 |
| Buriedness | 0.650 |
| Don/acc character | 4.717 |
| SiteScore | 0.440 |
| D Score | 0.331 |
| Compound | 84D |
| Residue | . / 3257 |
| Chain | TQ / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| Volume | 277.14 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.269 |
| Buriedness | 0.687 |
| Don/acc character | 1.557 |
| SiteScore | 0.735 |
| D Score | 0.608 |
| Compound | 84D |
| Residue | . / 3258 |
| Chain | UQ / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| Volume | 534.39 Å3 |
| Hydrophobicity | 0.076 |
| Hydrophilicity | 1.026 |
| Buriedness | 0.698 |
| Don/acc character | 3.597 |
| SiteScore | 0.909 |
| D Score | 0.904 |
| Compound | 84D |
| Residue | . / 3260 |
| Chain | WQ / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| Volume | 644.84 Å3 |
| Hydrophobicity | 0.049 |
| Hydrophilicity | 1.382 |
| Buriedness | 0.729 |
| Don/acc character | 1.277 |
| SiteScore | 1.021 |
| D Score | 0.927 |
| Compound | 84D |
| Residue | . / 3261 |
| Chain | XQ / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| Volume | 380.73 Å3 |
| Hydrophobicity | 0.092 |
| Hydrophilicity | 1.039 |
| Buriedness | 0.667 |
| Don/acc character | 1.805 |
| SiteScore | 0.800 |
| D Score | 0.771 |
| Compound | 84D |
| Residue | . / 3262 |
| Chain | YQ / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| Volume | 668.16 Å3 |
| Hydrophobicity | 0.047 |
| Hydrophilicity | 1.086 |
| Buriedness | 0.665 |
| Don/acc character | 1.734 |
| SiteScore | 0.978 |
| D Score | 0.985 |
| Compound | SPM |
| Residue | . / 3180 |
| Chain | UN / a |
| Non-redundant | False |
| Interacting RNA chains | V/a |
| Volume | 321.05 Å3 |
| Hydrophobicity | 0.210 |
| Hydrophilicity | 1.237 |
| Buriedness | 0.755 |
| Don/acc character | 1.180 |
| SiteScore | 0.878 |
| D Score | 0.784 |