Complex 8i3z
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.67 |
| System mass | 18.60 kDa |
| Deposition year | 2023 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Streptococcus |
| RCSB PDB Entry | 8i3z |
| Reference | Peng Xuemei, Liao Wenjian, Lin Xiaowei, Lilley David M J, Huang Lin. . Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets Nucleic Acids Research |
| Equivalence Class |
NR_all_83957.3
BGSU version: 4.49 |
| Compound | NMN |
| Residue | . / 101 |
| Chain | D / B |
| Non-redundant | True |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch, B/B: riboswitch |
| RNA family global | riboswitch |
| Volume | 165.33 Å3 |
| Hydrophobicity | 0.485 |
| Hydrophilicity | 0.973 |
| Buriedness | 0.689 |
| Don/acc character | 4.163 |
| SiteScore | 1.024 |
| D Score | 0.865 |
| Kd | — |
| Compound | NMN |
| Residue | . / 102 |
| Chain | E / B |
| Non-redundant | False |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch, B/B: riboswitch |
| RNA family global | riboswitch |
| Volume | 265.14 Å3 |
| Hydrophobicity | 0.103 |
| Hydrophilicity | 1.350 |
| Buriedness | 0.671 |
| Don/acc character | 1.510 |
| SiteScore | 1.132 |
| D Score | 0.902 |
| Kd | — |