HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8i3z

System information

Experimental technique X-ray
Experimental resolution 1.67
System mass 18.60 kDa
Deposition year 2023
Molecule type RNA
# RNA entities 1
Organism Streptococcus
RCSB PDB Entry 8i3z
Reference Peng Xuemei, Liao Wenjian, Lin Xiaowei, Lilley David M J, Huang Lin. . Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets Nucleic Acids Research

Compound NMN
Residue . / 101
Chain D / B
Non-redundant True
Interacting RNA chains B/B, A/A
Volume 163.95 Å3
Hydrophobicity 0.358
Hydrophilicity 1.028
Buriedness 0.683
Don/acc character 3.948
SiteScore 0.873
D Score 0.862

Compound NMN
Residue . / 102
Chain E / B
Non-redundant False
Interacting RNA chains B/B, A/A
Volume 264.45 Å3
Hydrophobicity 0.123
Hydrophilicity 1.390
Buriedness 0.668
Don/acc character 1.795
SiteScore 0.980
D Score 0.888