Complex 8oly
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.11 |
| System mass | 131.57 kDa |
| Deposition year | 2023 |
| Molecule type | RNA |
| # RNA entities | 2 |
| Organism | Oceanobacillus |
| RCSB PDB Entry | 8oly |
| Reference | Silvestri Ilaria, Manigrasso Jacopo, Andreani Alessandro, Brindani Nicoletta, Mas Caroline, Reiser Jean-Baptiste, Vidossich Pietro, Martino Gianfranco, McCarthy Andrew A., De Vivo Marco, Marcia Marco. . Targeting the conserved active site of splicing machines with specific and selective small molecule modulators Nature Communications |
| Compound | EPE |
| Residue | . / 447 |
| Chain | WA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | 91.92 Å3 |
| Hydrophobicity | 0.017 |
| Hydrophilicity | 1.309 |
| Buriedness | 0.625 |
| Don/acc character | 2.638 |
| SiteScore | 0.592 |
| D Score | 0.427 |
| Compound | EPE |
| Residue | . / 449 |
| Chain | YA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Compound | SPM |
| Residue | . / 452 |
| Chain | BB / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | 244.22 Å3 |
| Hydrophobicity | 0.063 |
| Hydrophilicity | 1.060 |
| Buriedness | 0.664 |
| Don/acc character | 1.123 |
| SiteScore | 0.678 |
| D Score | 0.609 |
| Compound | SPM |
| Residue | . / 453 |
| Chain | CB / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | 236.67 Å3 |
| Hydrophobicity | 0.114 |
| Hydrophilicity | 1.051 |
| Buriedness | 0.668 |
| Don/acc character | 2.148 |
| SiteScore | 0.668 |
| D Score | 0.598 |