Harnessing RIBOnucleic acid - Small molecules Structures
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Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probe
SM: J0C
Crystal structure of a class I PreQ1 riboswitch aptamer (wild-type) complexed with a cognate ligand-derived photoaffinity probe
Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn
SM: SAM
Crystal structure of the bacterial ribosomal decoding site in complex with G418 and Hg(II)
SM: GET GET
Crystal structure of the eukaryotic ribosomal decoding site in complex with G418 and Hg(II)
RNA duplex containing CC mispairs
SM: SPM
Crystal structure of xanthine riboswitch with xanthine, iridium hexammine soak
SM: GTP
Crystal structure of the Pepper aptamer in complex with HBC, iridium hexammine soak
SM: J8F
Crystal structure of the Pepper aptamer in complex with HBC
Crystal structure of the Pepper aptamer in complex with HBC, manganese soak
Crystal structure of the Pepper aptamer in complex with HBC, cesium soak
Crystal structure of the Pepper aptamer in complex with HBC485
SM: J8L
Crystal structure of the Pepper aptamer in complex with HBC497
SM: J8O
Crystal structure of the Pepper aptamer in complex with HBC508
SM: J8R
Crystal structure of the Pepper aptamer in complex with HBC514
SM: J8U
Crystal structure of the Pepper aptamer in complex with HBC525
SM: J8X
Crystal structure of the Pepper aptamer in complex with HBC620
SM: J93
Interaction between a fluoroquinolone derivative and RNAs with a single bulge
SM: 53D
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
SM: PAR SPM
High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
SM: GP3 GP3
LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
2'-F modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Crystal structure of Squash RNA aptamer in complex with DFHBI-1T with iridium (III) ions
SM: 2ZY
Crystal structure of Squash RNA aptamer in complex with DFHBI-1T
SM: 747
Spinach variant bound to DFHBI-1T
SM: 2ZY SPM SPM SPM
Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
SM: EDS EDS
ANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
3'-deoxy modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
TNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
A. baumannii Ribosome-Eravacycline complex: 30S
SM: YQM
A. baumannii Ribosome-Eravacycline complex: Empty 70S
SM: YQM YQM YQM
A. baumannii Ribosome-Eravacycline complex: P-site tRNA 70S
A. baumannii Ribosome-Eravacycline complex: E-site tRNA 70S
Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution
SM: ARG ARG YXM YXM
Crystal structure of r(GU)11G-NMM complex
SM: MMP
Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation
SM: ATP ATP ATP
Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)
SM: ATP ATP FUA
Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation
SM: ATP ATP
Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)
SM: ATP ATP GTP SCM SCM SCM
Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation
Elongating 70S ribosome complex in a post-translocation (POST) conformation
55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet
SM: 5GP 5GP SPM SPM SPM
55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet
55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)
SM: 5GP SPM SPM SPM
55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
SM: SPM SPM SPM
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium hexammine co-crystallized form)
SM: V5Z V5Z
Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium III hexammine soaking crystal form)
SM: GTP V5Z V5Z V5Z V5Z
Crystal structure of the Chili RNA aptamer in complex with DMHBI+
SM: GTP GTP SPM V6T V6T V6T V6T
Crystal structure of the Chili RNA aptamer in complex with DMHBO+
SM: SPM SPM SPM SPM V5Z V5Z V5Z V5Z
Cryo-EM structure of 70S ribosome stalled with TnaC peptide
SM: PAR TRP
Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
SM: CLM
Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B
SM: ATP
Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin
SM: 5I0 NAD SPM
Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)
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Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8