HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7o7z

System information

Experimental technique Electron Microscopy
Experimental resolution 2.40
System mass 4071.78 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Oryctolagus
RCSB PDB Entry 7o7z
Reference Bhatt Pramod R., Scaiola Alain, Loughran Gary, Leibundgut Marc, Kratzel Annika, Meurs Romane, Dreos René, O’Connor Kate M., McMillan Angus, Bode Jeffrey W., Thiel Volker, Gatfield David, Atkins John F., Ban Nenad. . Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome Science
Equivalence Class NR_all_21280.51, NR_all_06650.50
BGSU version: 4.49

Compound SPM
Residue . / 1909
Chain QC / A2
Non-redundant False
Interacting RNA chains A/A2
RNA environment detailled ion
RNA environment global RNA
RNA family chains A/A2: rRNA
RNA family global rRNA
Volume 729.90 Å3
Hydrophobicity 0.328
Hydrophilicity 0.996
Buriedness 0.781
Don/acc character 2.191
SiteScore 1.214
D Score 1.084
Kd

Compound SPM
Residue . / 4912
Chain FK / B5
Non-redundant True
Interacting RNA chains MA/B5
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains MA/B5: rRNA
RNA family global rRNA
Volume 586.87 Å3
Hydrophobicity 0.060
Hydrophilicity 1.415
Buriedness 0.772
Don/acc character 0.966
SiteScore 1.049
D Score 0.942
Kd

Compound SPM
Residue . / 4915
Chain IK / B5
Non-redundant True
Interacting RNA chains MA/B5
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains MA/B5: rRNA
RNA family global rRNA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd