Complex 7qi4
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.21 |
| System mass | 3115.32 kDa |
| Deposition year | 2021 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Homo |
| RCSB PDB Entry | 7qi4 |
| Reference | Singh Vivek, Itoh Yuzuru, Del’Olio Samuel, Hassan Asem, Naschberger Andreas, Flygaard Rasmus Kock, Nobe Yuko, Izumikawa Keiichi, Aibara Shintaro, Andréll Juni, Whitford Paul C., Barrientos Antoni, Taoka Masato, Amunts Alexey. . Mitoribosome structure with cofactors and modifications reveals mechanism of ligand binding and interactions with L1 stalk Nature Communications |
| Equivalence Class |
NR_all_12763.36,
NR_all_93855.31
BGSU version: 4.49 |
| Compound | NAD |
| Residue | . / 1701 |
| Chain | QC / AA |
| Non-redundant | True |
| Interacting RNA chains | A/AA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/AA: rRNA |
| RNA family global | rRNA |
| Volume | 866.08 Å3 |
| Hydrophobicity | 0.248 |
| Hydrophilicity | 1.412 |
| Buriedness | 0.822 |
| Don/acc character | 0.602 |
| SiteScore | 1.083 |
| D Score | 0.973 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1702 |
| Chain | RC / AA |
| Non-redundant | True |
| Interacting RNA chains | A/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/AA: rRNA |
| RNA family global | rRNA |
| Volume | 843.44 Å3 |
| Hydrophobicity | 0.133 |
| Hydrophilicity | 1.516 |
| Buriedness | 0.801 |
| Don/acc character | 1.703 |
| SiteScore | 1.219 |
| D Score | 0.926 |
| Kd | — |