HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7pjs

System information

Experimental technique Electron Microscopy
Experimental resolution 2.35
System mass 2244.17 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 7pjs
Reference Petrychenko Valentyn, Peng Bee-Zen, de A. P. Schwarzer Ana C., Peske Frank, Rodnina Marina V., Fischer Niels. . Structural mechanism of GTPase-powered ribosome-tRNA movement Nature Communications

Compound AM2
Residue . / 1682
Chain WO / a
Non-redundant True
Interacting RNA chains HA/a
Volume 575.21 Å3
Hydrophobicity 0.183
Hydrophilicity 1.183
Buriedness 0.718
Don/acc character 1.910
SiteScore 1.013
D Score 0.985

Compound AM2
Residue . / 1684
Chain YO / a
Non-redundant True
Interacting RNA chains HA/a
Volume 168.76 Å3
Hydrophobicity 0.237
Hydrophilicity 1.375
Buriedness 0.675
Don/acc character 0.902
SiteScore 0.988
D Score 0.709

Compound AM2
Residue . / 1685
Chain ZO / a
Non-redundant True
Interacting RNA chains HA/a
Volume 165.67 Å3
Hydrophobicity 0.475
Hydrophilicity 1.190
Buriedness 0.915
Don/acc character 1.115
SiteScore 1.054
D Score 0.792

Compound AM2
Residue . / 1689
Chain DP / a
Non-redundant True
Interacting RNA chains HA/a
Volume 719.61 Å3
Hydrophobicity 0.227
Hydrophilicity 1.101
Buriedness 0.739
Don/acc character 1.889
SiteScore 1.178
D Score 1.025