HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7pjv

System information

Experimental technique Electron Microscopy
Experimental resolution 3.10
System mass 2321.99 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 7pjv
Reference Petrychenko Valentyn, Peng Bee-Zen, de A. P. Schwarzer Ana C., Peske Frank, Rodnina Marina V., Fischer Niels. . Structural mechanism of GTPase-powered ribosome-tRNA movement Nature Communications

Compound AM2
Residue . / 1648
Chain YN / a
Non-redundant True
Interacting RNA chains HA/a
Volume 587.90 Å3
Hydrophobicity 0.161
Hydrophilicity 1.120
Buriedness 0.729
Don/acc character 2.624
SiteScore 1.021
D Score 1.012

Compound AM2
Residue . / 1652
Chain CO / a
Non-redundant True
Interacting RNA chains HA/a
Volume 131.03 Å3
Hydrophobicity 0.157
Hydrophilicity 1.021
Buriedness 0.691
Don/acc character 1.498
SiteScore 0.768
D Score 0.533

Compound AM2
Residue . / 1657
Chain HO / a
Non-redundant True
Interacting RNA chains HA/a
Volume 267.20 Å3
Hydrophobicity 0.041
Hydrophilicity 1.575
Buriedness 0.778
Don/acc character 1.151
SiteScore 0.723
D Score 0.570

Compound GDP
Residue . / 801
Chain RP / x
Non-redundant True
Interacting RNA chains H/A
Volume 428.06 Å3
Hydrophobicity 0.217
Hydrophilicity 1.804
Buriedness 0.819
Don/acc character 0.706
SiteScore 1.081
D Score 0.843