Complex 7oiz
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.90 |
| System mass | 2120.28 kDa |
| Deposition year | 2021 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 7oiz |
| Reference |
Su Ting, Kudva Renuka, Becker Thomas, Buschauer Robert, Komar Tobias, Berninghausen Otto, von Heijne Gunnar, Cheng Jingdong, Beckmann Roland.
2021.
Structural basis of |
| Equivalence Class |
NR_all_83717.187,
NR_all_56726.172,
NR_all_56633.10
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | PAR |
| Residue | . / 1601 |
| Chain | DB / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 252.45 Å3 |
| Hydrophobicity | 0.306 |
| Hydrophilicity | 1.114 |
| Buriedness | 0.692 |
| Don/acc character | 1.505 |
| SiteScore | 1.100 |
| D Score | 0.934 |
| Kd | — |
| Compound | TRP |
| Residue | . / 6206 |
| Chain | QM / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | V/a: rRNA |
| RNA family global | rRNA |
| Volume | 446.24 Å3 |
| Hydrophobicity | 0.412 |
| Hydrophilicity | 1.313 |
| Buriedness | 0.775 |
| Don/acc character | 0.849 |
| SiteScore | 1.051 |
| D Score | 0.977 |
| Kd | — |