HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7pjy

System information

Experimental technique Electron Microscopy
Experimental resolution 3.10
System mass 2321.17 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 7pjy
Reference Petrychenko Valentyn, Peng Bee-Zen, de A. P. Schwarzer Ana C., Peske Frank, Rodnina Marina V., Fischer Niels. . Structural mechanism of GTPase-powered ribosome-tRNA movement Nature Communications

Compound AM2
Residue . / 1620
Chain AN / a
Non-redundant True
Interacting RNA chains HA/a
Volume 273.03 Å3
Hydrophobicity 0.170
Hydrophilicity 1.042
Buriedness 0.613
Don/acc character 3.381
SiteScore 0.999
D Score 0.848

Compound AM2
Residue . / 1626
Chain GN / a
Non-redundant True
Interacting RNA chains HA/a
Volume 139.60 Å3
Hydrophobicity 0.581
Hydrophilicity 1.126
Buriedness 0.931
Don/acc character 0.792
SiteScore 1.036
D Score 0.786

Compound AM2
Residue . / 1628
Chain IN / a
Non-redundant True
Interacting RNA chains HA/a
Volume 116.62 Å3
Hydrophobicity 0.152
Hydrophilicity 1.603
Buriedness 0.720
Don/acc character 0.847
SiteScore 0.783
D Score 0.360

Compound AM2
Residue . / 1636
Chain QN / a
Non-redundant True
Interacting RNA chains HA/a
Volume 357.06 Å3
Hydrophobicity 0.158
Hydrophilicity 1.249
Buriedness 0.734
Don/acc character 1.408
SiteScore 1.174
D Score 0.973