HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7p2e

System information

Experimental technique Electron Microscopy
Experimental resolution 2.40
System mass 1179.81 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 7p2e
Reference Itoh Yuzuru, Singh Vivek, Khawaja Anas, Naschberger Andreas, Nguyen Minh Duc, Rorbach Joanna, Amunts Alexey. . Structure of the mitoribosomal small subunit with streptomycin reveals Fe-S clusters and physiological molecules eLife

Compound 5I0
Residue . / 1703
Chain IA / A
Non-redundant True
Interacting RNA chains A/A
Volume 206.14 Å3
Hydrophobicity 0.108
Hydrophilicity 1.623
Buriedness 0.610
Don/acc character 0.829
SiteScore 0.935
D Score 0.577

Compound NAD
Residue . / 1701
Chain GA / A
Non-redundant True
Interacting RNA chains A/A
Volume 961.43 Å3
Hydrophobicity 0.246
Hydrophilicity 1.462
Buriedness 0.825
Don/acc character 0.754
SiteScore 1.085
D Score 0.959

Compound SPM
Residue . / 1702
Chain HA / A
Non-redundant False
Interacting RNA chains A/A
Volume 727.85 Å3
Hydrophobicity 0.142
Hydrophilicity 1.661
Buriedness 0.814
Don/acc character 1.354
SiteScore 1.227
D Score 0.887