HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7eom

System information

Experimental technique X-ray
Experimental resolution 2.70
System mass 16.33 kDa
Deposition year 2021
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 7eom
Reference Huang Kaiyi, Chen Xianjun, Li Chunyan, Song Qianqian, Li Huiwen, Zhu Linyong, Yang Yi, Ren Aiming. . Structure-based investigation of fluorogenic Pepper aptamer Nature Chemical Biology
Equivalence Class NR_all_54098.5
BGSU version: 4.48

Compound J8R
Residue . / 102
Chain C / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/A: aptamer_rna
RNA family global aptamer_rna
Volume 194.82 Å3
Hydrophobicity 1.370
Hydrophilicity 0.662
Buriedness 0.648
Don/acc character 1.944
SiteScore 1.175
D Score 1.094
Kd