Complex 7oav
System information
Experimental technique | X-ray |
Experimental resolution | 2.99 |
System mass | 72.60 kDa |
Deposition year | 2021 |
Molecule type | RNA |
# RNA entities | 1 |
Organism | N/A |
RCSB PDB Entry | 7oav |
Reference | Mieczkowski Mateusz, Steinmetzger Christian, Bessi Irene, Lenz Ann-Kathrin, Schmiedel Alexander, Holzapfel Marco, Lambert Christoph, Pena Vladimir, Höbartner Claudia. . Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine Nature Communications |
Compound | GTP |
Residue | . / 102 |
Chain | Q / C |
Non-redundant | False |
Interacting RNA chains | C/C |
Volume | - |
Hydrophobicity | - |
Hydrophilicity | - |
Buriedness | - |
Don/acc character | - |
SiteScore | - |
D Score | - |
Compound | V5Z |
Residue | . / 101 |
Chain | E / A |
Non-redundant | False |
Interacting RNA chains | C/C, A/A |
Volume | 873.62 Å3 |
Hydrophobicity | 0.580 |
Hydrophilicity | 1.102 |
Buriedness | 0.731 |
Don/acc character | 2.037 |
SiteScore | 1.022 |
D Score | 1.019 |
Compound | V5Z |
Residue | . / 101 |
Chain | K / B |
Non-redundant | False |
Interacting RNA chains | D/D, B/B |
Volume | 491.52 Å3 |
Hydrophobicity | 0.884 |
Hydrophilicity | 0.950 |
Buriedness | 0.747 |
Don/acc character | 1.581 |
SiteScore | 1.051 |
D Score | 1.079 |
Compound | V5Z |
Residue | . / 101 |
Chain | P / C |
Non-redundant | False |
Interacting RNA chains | C/C, A/A |
Volume | 736.08 Å3 |
Hydrophobicity | 0.480 |
Hydrophilicity | 1.156 |
Buriedness | 0.726 |
Don/acc character | 1.701 |
SiteScore | 1.019 |
D Score | 0.999 |
Compound | V5Z |
Residue | . / 101 |
Chain | T / D |
Non-redundant | False |
Interacting RNA chains | D/D, B/B |
Volume | 483.97 Å3 |
Hydrophobicity | 0.849 |
Hydrophilicity | 0.934 |
Buriedness | 0.724 |
Don/acc character | 1.756 |
SiteScore | 1.038 |
D Score | 1.070 |