HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7eok

System information

Experimental technique X-ray
Experimental resolution 2.70
System mass 16.50 kDa
Deposition year 2021
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 7eok
Reference Huang Kaiyi, Chen Xianjun, Li Chunyan, Song Qianqian, Li Huiwen, Zhu Linyong, Yang Yi, Ren Aiming. . Structure-based investigation of fluorogenic Pepper aptamer Nature Chemical Biology
Equivalence Class NR_all_54098.5
BGSU version: 4.48

Compound J8L
Residue . / 102
Chain C / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/A: aptamer_rna
RNA family global aptamer_rna
Volume 176.65 Å3
Hydrophobicity 0.985
Hydrophilicity 0.725
Buriedness 0.612
Don/acc character 3.397
SiteScore 1.020
D Score 0.901
Kd