HARIBOSS - RNA-SM complexes list

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Crystal structure of theophylline aptamer in complex with TAL4

SM: QEU QEU

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E. coli 50S ribosome bound to compound streptogramin A analog 3142

SM: UE6

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E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

SM: UCX UDF

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E. coli 50S ribosome bound to compound streptogramin A analog 3146

SM: UEC

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E. coli 50S ribosome bound to solithromycin and VM1

SM: EM1 VIR

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E. coli 50S ribosome bound to tiamulin and VS1

SM: MUL

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E. coli 50S ribosome bound to tiamulin and azithromycin

SM: MUL ZIT

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E. coli 50S ribosome bound to compound streptogramin A analog 3336

SM: UI0

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E. coli 50S ribosome bound to antibiotic analog SLC09

SM: UI9

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E. coli 50S ribosome bound to antibiotic analog SLC30

SM: UIF

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E. coli 50S ribosome bound to antibiotic analog SLC31

SM: UH0

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E. coli 70S ribosome with A-loop mutations U2554C and U2555C

SM: PAR SPM

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Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

SM: T8B

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Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

SM: PAR SPM

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

SM: AKN AKN AKN AKN AKN AKN AKN AKN

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

SM: KAN KAN KAN KAN KAN KAN KAN

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Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

SM: GDP

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M. tuberculosis RNAP paused complex with B. subtilis NusG and GMPCPP

SM: G2P

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Structure of Beetroot dimer bound to DFAME

SM: X5R X5R

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Structure of Beetroot dimer bound to DFHO

SM: 747 747

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Beetroot dimer bound to ThT

SM: TFX TFX

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Wobble Beetroot (A16U-U38G) dimer bound to DFHO

SM: 747 747

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Apo structure of the TPP riboswitch aptamer domain

SM: PG4

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PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform

SM: PRF PRF PRF PRF PRF PRF

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

SM: ARG ARG ERY ERY HGR HGR

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

SM: ARG ARG HGR HGR ZIT ZIT

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

SM: ARG ARG HGR HGR TEL TEL

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Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

SM: ARG ARG ERY HGR HGR

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Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

SM: ARG ARG HGR HGR ZIT ZIT

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Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

SM: ARG ARG HGR HGR TEL TEL

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Human nuclear pre-60S ribosomal subunit (State I1)

SM: GTP

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Human nuclear pre-60S ribosomal subunit (State I2)

SM: GTP

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Human nuclear pre-60S ribosomal subunit (State I3)

SM: GTP

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E. coli 70S ribosome with an improved MS2 tag inserted in H98

SM: FME

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40S subunit of the Giardia lamblia 80S ribosome

SM: YAT

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Class I type III preQ1 riboswitch from E. coli

SM: PRF PRF

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Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

SM: G4P

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Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

SM: GCP

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Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

SM: GCP

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Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

SM: 6IF 6IF

8g4i

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40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V1 conformation

SM: YAT

8g4s

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40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

SM: YAT

8g4w

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Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand

SM: PRF

8g5y

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mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

SM: 3H3 ANM

8g5z

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mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

SM: 3H3 ANM GSP

8g60

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mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

SM: 3H3 ANM

8g61

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mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

SM: 3H3 ANM

8g6j

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mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

SM: 3HE GSP HMT

8g6w

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Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe

SM: PAR

8g6x

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Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe

SM: SPM

8g7e

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Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand

SM: PRF

8g7q

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Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

SM: PAR

8g7r

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Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)

SM: PAR

8g8z

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Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand

SM: PRF

8gh6

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Bombyx mori R2 retrotransposon initiating target-primed reverse transcription

SM: TTP

8glp

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mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

SM: 3H3 ANM

8gs2

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Structure of the Cas7-11-Csx29-guide RNA-target RNA (non-matching PFS) complex

SM: C5P

8gwe

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SARS-CoV-2 E-RTC complex with RNA-nsp9 and GMPPNP

SM: GNP

8gxb

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Crystal structure of NAD+ -II riboswitch in complex with NAD+

SM: NAD NAD

8gxc

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Crystal structure of NAD+ -II riboswitch in complex with NMN

SM: NMN NMN