Complex 8gxb
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.15 |
| System mass | 97.43 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Streptococcus |
| RCSB PDB Entry | 8gxb |
| Reference | Xu Xiaochen, Egger Michaela, Li Chunyan, Chen Hao, Micura Ronald, Ren Aiming. 2023. Structure-based investigations of the NAD+-II riboswitch Nucleic Acids Research |
| Equivalence Class |
NR_all_22486.3,
NR_all_24274.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | NAD |
| Residue | . / 101 |
| Chain | H / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 140.97 Å3 |
| Hydrophobicity | 0.496 |
| Hydrophilicity | 0.859 |
| Buriedness | 0.647 |
| Don/acc character | 3.380 |
| SiteScore | 0.845 |
| D Score | 0.849 |
| Kd | — |
| Compound | NAD |
| Residue | . / 101 |
| Chain | S / B |
| Non-redundant | True |
| Interacting RNA chains | B/B |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/B: riboswitch |
| RNA family global | riboswitch |
| Volume | 192.42 Å3 |
| Hydrophobicity | 0.407 |
| Hydrophilicity | 0.970 |
| Buriedness | 0.664 |
| Don/acc character | 3.554 |
| SiteScore | 1.096 |
| D Score | 0.964 |
| Kd | — |