HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8ev6

System information

Experimental technique X-ray
Experimental resolution 2.95
System mass 4563.75 kDa
Deposition year 2022
Molecule type RNA/Protein
# RNA entities 6
Organism Thermus
RCSB PDB Entry 8ev6
Reference Seely Savannah M., Parajuli Narayan P., De Tarafder Arindam, Ge Xueliang, Sanyal Suparna, Gagnon Matthieu G.. . Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome Nature Communications

Compound AKN
Residue . / 3936
Chain HNA / 1A
Non-redundant True
Interacting RNA chains CB/1x, A/1A
Volume 590.99 Å3
Hydrophobicity 0.298
Hydrophilicity 0.909
Buriedness 0.708
Don/acc character 1.075
SiteScore 1.032
D Score 1.068

Compound AKN
Residue . / 1913
Chain BDB / 1a
Non-redundant True
Interacting RNA chains FA/1a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound AKN
Residue . / 3576
Chain BBC / 2A
Non-redundant True
Interacting RNA chains GD/2x, EB/2A
Volume 684.97 Å3
Hydrophobicity 0.232
Hydrophilicity 0.942
Buriedness 0.708
Don/acc character 0.981
SiteScore 1.026
D Score 1.058

Compound AKN
Residue . / 1911
Chain XOC / 2a
Non-redundant False
Interacting RNA chains JC/2a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -