Complex 8ev6
System information
Experimental technique | X-ray |
Experimental resolution | 2.95 |
System mass | 4563.75 kDa |
Deposition year | 2022 |
Molecule type | RNA/Protein |
# RNA entities | 6 |
Organism | Thermus |
RCSB PDB Entry | 8ev6 |
Reference | Seely Savannah M., Parajuli Narayan P., De Tarafder Arindam, Ge Xueliang, Sanyal Suparna, Gagnon Matthieu G.. . Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome Nature Communications |
Compound | AKN |
Residue | . / 3936 |
Chain | HNA / 1A |
Non-redundant | True |
Interacting RNA chains | CB/1x, A/1A |
Volume | 617.06 Å3 |
Hydrophobicity | 0.280 |
Hydrophilicity | 0.916 |
Buriedness | 0.706 |
Don/acc character | 1.826 |
SiteScore | 1.029 |
D Score | 1.065 |
Compound | AKN |
Residue | . / 1913 |
Chain | BDB / 1a |
Non-redundant | True |
Interacting RNA chains | FA/1a |
Volume | 602.65 Å3 |
Hydrophobicity | 0.056 |
Hydrophilicity | 1.096 |
Buriedness | 0.697 |
Don/acc character | 2.765 |
SiteScore | 0.999 |
D Score | 1.001 |
Compound | AKN |
Residue | . / 3576 |
Chain | BBC / 2A |
Non-redundant | True |
Interacting RNA chains | EB/2A, GD/2x |
Volume | 702.12 Å3 |
Hydrophobicity | 0.185 |
Hydrophilicity | 0.977 |
Buriedness | 0.706 |
Don/acc character | 1.862 |
SiteScore | 1.018 |
D Score | 1.045 |
Compound | AKN |
Residue | . / 1911 |
Chain | XOC / 2a |
Non-redundant | False |
Interacting RNA chains | JC/2a |
Volume | 263.42 Å3 |
Hydrophobicity | 0.083 |
Hydrophilicity | 0.962 |
Buriedness | 0.675 |
Don/acc character | 3.045 |
SiteScore | 0.875 |
D Score | 0.872 |