Complex 8ekc
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.70 |
| System mass | 2213.17 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 8ekc |
| Reference | Paranjpe Madhura N, Marina Valeria I, Grachev Aleksandr A, Maviza Tinashe P, Tolicheva Olga A, Paleskava Alena, Osterman Ilya A, Sergiev Petr V, Konevega Andrey L, Polikanov Yury S, Gagnon Matthieu G. . Insights into the molecular mechanism of translation inhibition by the ribosome-targeting antibiotic thermorubin Nucleic Acids Research |
| Equivalence Class |
NR_all_83717.185,
NR_all_56726.170
BGSU version: 4.48 |
| Compound | T8B |
| Residue | . / 3133 |
| Chain | FG / a |
| Non-redundant | True |
| Interacting RNA chains | A/a, Y/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/a: rRNA, Y/A: rRNA |
| RNA family global | rRNA |
| Volume | 255.88 Å3 |
| Hydrophobicity | 0.255 |
| Hydrophilicity | 1.029 |
| Buriedness | 0.646 |
| Don/acc character | 1.491 |
| SiteScore | 0.968 |
| D Score | 0.992 |
| Kd | — |