Complex 8eyu
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.95 |
| System mass | 32.89 kDa |
| Deposition year | 2022 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8eyu |
| Reference | Passalacqua Luiz F. M., Starich Mary R., Link Katie A., Wu Jiahui, Knutson Jay R., Tjandra Nico, Jaffrey Samie R., Ferré-D’Amaré Adrian R.. . Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture Nature Communications |
| Equivalence Class |
NR_all_98067.3
BGSU version: 4.48 |
| Compound | X5R |
| Residue | . / 103 |
| Chain | E / B |
| Non-redundant | True |
| Interacting RNA chains | A/B |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 231.53 Å3 |
| Hydrophobicity | 1.161 |
| Hydrophilicity | 0.564 |
| Buriedness | 0.591 |
| Don/acc character | 3.203 |
| SiteScore | 1.170 |
| D Score | 1.111 |
| Kd | — |
| Compound | X5R |
| Residue | . / 104 |
| Chain | I / A |
| Non-redundant | True |
| Interacting RNA chains | B/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/A: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 196.88 Å3 |
| Hydrophobicity | 1.203 |
| Hydrophilicity | 0.621 |
| Buriedness | 0.629 |
| Don/acc character | 4.636 |
| SiteScore | 1.163 |
| D Score | 1.087 |
| Kd | — |