Complex 8fza
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.30 |
| System mass | 19.65 kDa |
| Deposition year | 2023 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 8fza |
| Reference | Schroeder Griffin M., Kiliushik Daniil, Jenkins Jermaine L., Wedekind Joseph E.. 2023. Structure and function analysis of a type III preQ1-I riboswitch from Escherichia coli reveals direct metabolite sensing by the Shine-Dalgarno sequence Journal of Biological Chemistry |
| Equivalence Class |
NR_all_04796.1,
NR_all_17339.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | PRF |
| Residue | . / 101 |
| Chain | C / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 246.96 Å3 |
| Hydrophobicity | 0.816 |
| Hydrophilicity | 1.065 |
| Buriedness | 0.782 |
| Don/acc character | 0.998 |
| SiteScore | 1.133 |
| D Score | 0.968 |
| Kd | — |
| Compound | PRF |
| Residue | . / 101 |
| Chain | F / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/B: riboswitch |
| RNA family global | riboswitch |
| Volume | 227.41 Å3 |
| Hydrophobicity | 0.452 |
| Hydrophilicity | 1.058 |
| Buriedness | 0.770 |
| Don/acc character | 1.235 |
| SiteScore | 1.060 |
| D Score | 0.881 |
| Kd | — |