HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8emm

System information

Experimental technique Electron Microscopy
Experimental resolution 2.10
System mass 2210.53 kDa
Deposition year 2022
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 8emm
Reference Watson Zoe L., Knudson Isaac J., Ward Fred R., Miller Scott J., Cate Jamie H. D., Schepartz Alanna, Abramyan Ara M.. . Atomistic simulations of the Escherichia coli ribosome provide selection criteria for translationally active substrates Nature Chemistry

Compound PAR
Residue . / 1601
Chain CL / A
Non-redundant True
Interacting RNA chains HA/A
Volume 288.81 Å3
Hydrophobicity 0.059
Hydrophilicity 1.093
Buriedness 0.700
Don/acc character 1.475
SiteScore 0.944
D Score 0.930

Compound SPM
Residue . / 6219
Chain NJ / a
Non-redundant True
Interacting RNA chains A/a
Volume 331.34 Å3
Hydrophobicity 0.262
Hydrophilicity 1.064
Buriedness 0.740
Don/acc character 1.502
SiteScore 1.003
D Score 0.813