HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8emm

System information

Experimental technique Electron Microscopy
Experimental resolution 2.10
System mass 2210.52 kDa
Deposition year 2022
Molecule type RNA/Protein
# RNA entities 4
Organism Escherichia
RCSB PDB Entry 8emm
Reference Watson Zoe L., Knudson Isaac J., Ward Fred R., Miller Scott J., Cate Jamie H. D., Schepartz Alanna, Abramyan Ara M.. . Atomistic simulations of the Escherichia coli ribosome provide selection criteria for translationally active substrates Nature Chemistry

Compound PAR
Residue . / 1601
Chain CL / A
Non-redundant False
Interacting RNA chains HA/A
Volume 282.29 Å3
Hydrophobicity 0.059
Hydrophilicity 1.145
Buriedness 0.699
Don/acc character 1.629
SiteScore 0.959
D Score 0.933

Compound SPM
Residue . / 6219
Chain NJ / a
Non-redundant False
Interacting RNA chains A/a
Volume 324.13 Å3
Hydrophobicity 0.276
Hydrophilicity 1.096
Buriedness 0.737
Don/acc character 1.542
SiteScore 0.851
D Score 0.801