HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8ev7

System information

Experimental technique X-ray
Experimental resolution 2.89
System mass 4560.66 kDa
Deposition year 2022
Molecule type RNA/Protein
# RNA entities 6
Organism Thermus
RCSB PDB Entry 8ev7
Reference Seely Savannah M., Parajuli Narayan P., De Tarafder Arindam, Ge Xueliang, Sanyal Suparna, Gagnon Matthieu G.. . Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome Nature Communications

Compound KAN
Residue . / 3933
Chain ENA / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume 475.74 Å3
Hydrophobicity 0.023
Hydrophilicity 1.109
Buriedness 0.668
Don/acc character 2.161
SiteScore 0.919
D Score 0.901

Compound KAN
Residue . / 3935
Chain GNA / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume 598.88 Å3
Hydrophobicity 0.072
Hydrophilicity 1.268
Buriedness 0.713
Don/acc character 1.589
SiteScore 1.010
D Score 0.954

Compound KAN
Residue . / 1955
Chain FEB / 1a
Non-redundant True
Interacting RNA chains FA/1a
Volume 281.60 Å3
Hydrophobicity 0.071
Hydrophilicity 1.023
Buriedness 0.683
Don/acc character 2.060
SiteScore 0.900
D Score 0.896

Compound KAN
Residue . / 3568
Chain ACC / 2A
Non-redundant True
Interacting RNA chains EB/2A
Volume 479.17 Å3
Hydrophobicity 0.037
Hydrophilicity 1.167
Buriedness 0.667
Don/acc character 1.998
SiteScore 0.945
D Score 0.916

Compound KAN
Residue . / 3569
Chain BCC / 2A
Non-redundant True
Interacting RNA chains EB/2A
Volume 578.30 Å3
Hydrophobicity 0.045
Hydrophilicity 1.267
Buriedness 0.723
Don/acc character 1.514
SiteScore 1.017
D Score 0.961

Compound KAN
Residue . / 1828
Chain JMC / 2a
Non-redundant False
Interacting RNA chains JC/2a
Volume 293.61 Å3
Hydrophobicity 0.107
Hydrophilicity 1.040
Buriedness 0.690
Don/acc character 1.638
SiteScore 0.880
D Score 0.867