Complex 8ev7
System information
Experimental technique | X-ray |
Experimental resolution | 2.89 |
System mass | 4560.66 kDa |
Deposition year | 2022 |
Molecule type | RNA/Protein |
# RNA entities | 6 |
Organism | Thermus |
RCSB PDB Entry | 8ev7 |
Reference | Seely Savannah M., Parajuli Narayan P., De Tarafder Arindam, Ge Xueliang, Sanyal Suparna, Gagnon Matthieu G.. . Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome Nature Communications |
Compound | KAN |
Residue | . / 3933 |
Chain | ENA / 1A |
Non-redundant | True |
Interacting RNA chains | A/1A |
Volume | 475.74 Å3 |
Hydrophobicity | 0.023 |
Hydrophilicity | 1.109 |
Buriedness | 0.668 |
Don/acc character | 2.161 |
SiteScore | 0.919 |
D Score | 0.901 |
Compound | KAN |
Residue | . / 3935 |
Chain | GNA / 1A |
Non-redundant | True |
Interacting RNA chains | A/1A |
Volume | 598.88 Å3 |
Hydrophobicity | 0.072 |
Hydrophilicity | 1.268 |
Buriedness | 0.713 |
Don/acc character | 1.589 |
SiteScore | 1.010 |
D Score | 0.954 |
Compound | KAN |
Residue | . / 1955 |
Chain | FEB / 1a |
Non-redundant | True |
Interacting RNA chains | FA/1a |
Volume | 281.60 Å3 |
Hydrophobicity | 0.071 |
Hydrophilicity | 1.023 |
Buriedness | 0.683 |
Don/acc character | 2.060 |
SiteScore | 0.900 |
D Score | 0.896 |
Compound | KAN |
Residue | . / 3568 |
Chain | ACC / 2A |
Non-redundant | True |
Interacting RNA chains | EB/2A |
Volume | 479.17 Å3 |
Hydrophobicity | 0.037 |
Hydrophilicity | 1.167 |
Buriedness | 0.667 |
Don/acc character | 1.998 |
SiteScore | 0.945 |
D Score | 0.916 |
Compound | KAN |
Residue | . / 3569 |
Chain | BCC / 2A |
Non-redundant | True |
Interacting RNA chains | EB/2A |
Volume | 578.30 Å3 |
Hydrophobicity | 0.045 |
Hydrophilicity | 1.267 |
Buriedness | 0.723 |
Don/acc character | 1.514 |
SiteScore | 1.017 |
D Score | 0.961 |
Compound | KAN |
Residue | . / 1828 |
Chain | JMC / 2a |
Non-redundant | False |
Interacting RNA chains | JC/2a |
Volume | 293.61 Å3 |
Hydrophobicity | 0.107 |
Hydrophilicity | 1.040 |
Buriedness | 0.690 |
Don/acc character | 1.638 |
SiteScore | 0.880 |
D Score | 0.867 |