Complex 8ev7
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.89 |
| System mass | 4560.66 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 6 |
| Organism | Thermus |
| RCSB PDB Entry | 8ev7 |
| Reference | Seely Savannah M., Parajuli Narayan P., De Tarafder Arindam, Ge Xueliang, Sanyal Suparna, Gagnon Matthieu G.. . Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome Nature Communications |
| Compound | KAN |
| Residue | . / 3933 |
| Chain | ENA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| Volume | 475.74 Å3 |
| Hydrophobicity | 0.023 |
| Hydrophilicity | 1.109 |
| Buriedness | 0.668 |
| Don/acc character | 2.161 |
| SiteScore | 0.919 |
| D Score | 0.901 |
| Compound | KAN |
| Residue | . / 3935 |
| Chain | GNA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| Volume | 598.88 Å3 |
| Hydrophobicity | 0.072 |
| Hydrophilicity | 1.268 |
| Buriedness | 0.713 |
| Don/acc character | 1.589 |
| SiteScore | 1.010 |
| D Score | 0.954 |
| Compound | KAN |
| Residue | . / 1955 |
| Chain | FEB / 1a |
| Non-redundant | True |
| Interacting RNA chains | FA/1a |
| Volume | 281.60 Å3 |
| Hydrophobicity | 0.071 |
| Hydrophilicity | 1.023 |
| Buriedness | 0.683 |
| Don/acc character | 2.060 |
| SiteScore | 0.900 |
| D Score | 0.896 |
| Compound | KAN |
| Residue | . / 3568 |
| Chain | ACC / 2A |
| Non-redundant | True |
| Interacting RNA chains | EB/2A |
| Volume | 479.17 Å3 |
| Hydrophobicity | 0.037 |
| Hydrophilicity | 1.167 |
| Buriedness | 0.667 |
| Don/acc character | 1.998 |
| SiteScore | 0.945 |
| D Score | 0.916 |
| Compound | KAN |
| Residue | . / 3569 |
| Chain | BCC / 2A |
| Non-redundant | True |
| Interacting RNA chains | EB/2A |
| Volume | 578.30 Å3 |
| Hydrophobicity | 0.045 |
| Hydrophilicity | 1.267 |
| Buriedness | 0.723 |
| Don/acc character | 1.514 |
| SiteScore | 1.017 |
| D Score | 0.961 |
| Compound | KAN |
| Residue | . / 1828 |
| Chain | JMC / 2a |
| Non-redundant | False |
| Interacting RNA chains | JC/2a |
| Volume | 293.61 Å3 |
| Hydrophobicity | 0.107 |
| Hydrophilicity | 1.040 |
| Buriedness | 0.690 |
| Don/acc character | 1.638 |
| SiteScore | 0.880 |
| D Score | 0.867 |