Harnessing RIBOnucleic acid - Small molecules Structures
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State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb1-MTD local model
SM: SAH
55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet
SM: 5GP 5GP SPM SPM SPM
55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet
39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2
SM: 5GP 5GP SPM SPM
55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)
SM: 5GP SPM SPM SPM
55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)
Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA
SM: ERY
Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA
Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA
SM: TEL
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
SM: BLS
Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan
SM: TRP
Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan
Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
SM: SPM SPM SPM
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium hexammine co-crystallized form)
SM: V5Z V5Z
Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium III hexammine soaking crystal form)
SM: GTP V5Z V5Z V5Z V5Z
Crystal structure of the Chili RNA aptamer in complex with DMHBI+
SM: GTP GTP SPM V6T V6T V6T V6T
Crystal structure of the Chili RNA aptamer in complex with DMHBO+
SM: SPM SPM SPM SPM V5Z V5Z V5Z V5Z
Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.
SM: GTP GTP
Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).
Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).
Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).
Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).
Human mitochondrial ribosome in complex with P/E-tRNA
SM: DOL
Cryo-EM structure of 70S ribosome stalled with TnaC peptide
SM: PAR TRP
Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
Lassa virus L protein in an elongation conformation [ELONGATION]
SM: 2KH
Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP
SM: 2KH 2KH
Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
SM: CLM
La Crosse virus polymerase at transcription capped RNA cleavage stage
SM: ATP
La Crosse virus polymerase in transcription mode with cleaved capped RNA entering the polymerase active site
La Crosse virus polymerase at replication initiation stage
Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B
Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin
SM: 5I0 NAD SPM
Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)
E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
SM: SCM
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III
E. faecalis 70S ribosome with P-tRNA, state IV
Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP
SM: GCP
70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells
70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)
SM: AM2 AM2 AM2 AM2
Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)
SM: AM2
Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)
Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)
SM: AM2 AM2 AM2 GDP
Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)
SM: AM2 GDP
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a
SM: NAD
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3
Xist (m6A)UCG tetraloop RNA bound to the YTH domain of YTHDC1
SM: GTP
Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
SM: UTP
Structure of Candida albicans 80S ribosome in complex with cycloheximide
SM: 3HE
Current selection range: to
Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8