Complex 7om7
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.40 |
| System mass | 329.53 kDa |
| Deposition year | 2021 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 7om7 |
| Reference | Ferrero Diego S., Falqui Michela, Verdaguer Nuria. 2021. Snapshots of a Non-Canonical RdRP in Action Viruses |
| Equivalence Class |
NR_all_71999.2
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 2KH |
| Residue | . / 701 |
| Chain | M / A |
| Non-redundant | True |
| Interacting RNA chains | E/E, F/F |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | E/E: synthetic construct, F/F: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 700.75 Å3 |
| Hydrophobicity | 0.357 |
| Hydrophilicity | 1.313 |
| Buriedness | 0.847 |
| Don/acc character | 0.673 |
| SiteScore | 1.099 |
| D Score | 1.020 |
| Kd | — |
| Compound | 2KH |
| Residue | . / 701 |
| Chain | O / B |
| Non-redundant | False |
| Interacting RNA chains | H/H, G/G |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | G/G: synthetic construct, H/H: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 634.55 Å3 |
| Hydrophobicity | 0.212 |
| Hydrophilicity | 1.594 |
| Buriedness | 0.856 |
| Don/acc character | 0.691 |
| SiteScore | 1.106 |
| D Score | 0.934 |
| Kd | — |