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Harnessing RIBOnucleic acid - Small molecules Structures

RNA-SM complexes

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70 RNA-SM complexes found
Structure of complex 1ykv

1ykv

Crystal structure of the Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene

SM: DAI DAI

Structure of complex 1yls

1yls

Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene

SM: DAI DAI

Structure of complex 2gcv

2gcv

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme

SM: MES MES

Structure of complex 2h0w

2h0w

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme

SM: MES MES

Structure of complex 2h0z

2h0z

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate

SM: G6P

Structure of complex 2ho6

2ho6

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme

SM: MES MES

Structure of complex 2ho7

2ho7

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate

SM: G6P

Structure of complex 2nz4

2nz4

Structural investigation of the GlmS ribozyme bound to its catalytic cofactor

SM: GLP GLP GLP GLP

Structure of complex 2z74

2z74

T. tengcongensis glmS ribozyme bound to glucose-6-phosphate

SM: G6P

Structure of complex 2z75

2z75

T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate

SM: GLP

Structure of complex 38jc

38jc

RNA polymerase ribozyme 85h34 replication complex, consensus structure.

SM: APC

Structure of complex 38jd

38jd

RNA polymerase ribozyme 85h34 replication complex, subclass 2 structure

SM: APC

Structure of complex 38je

38je

RNA polymerase ribozyme 85h34 replication complex, subclass 7 structure

SM: APC

Structure of complex 3b4a

3b4a

T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate

SM: GLP

Structure of complex 3b4b

3b4b

T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage

SM: GLP

Structure of complex 3b4c

3b4c

T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage

SM: GLP

Structure of complex 3g8t

3g8t

Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P

SM: GLP GLP GLP GLP

Structure of complex 3g96

3g96

Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P

SM: 6MN

Structure of complex 3g9c

3g9c

Crystal structure of the product Bacillus anthracis glmS ribozyme

SM: GLP

Structure of complex 3l3c

3l3c

Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P

SM: G6P G6P G6P G6P

Structure of complex 4e8k

4e8k

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate

SM: EPE EPE EPE EPE EPE SPM

Structure of complex 4e8m

4e8m

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+

SM: EPE EPE EPE EPE EPE SPM SPM

Structure of complex 4e8n

4e8n

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+

SM: EPE EPE SPM

Structure of complex 4e8p

4e8p

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+

SM: EPE EPE EPE EPE SPM

Structure of complex 4e8q

4e8q

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+

SM: EPE EPE EPE SPM

Structure of complex 4e8r

4e8r

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+

SM: EPE EPE EPE EPE

Structure of complex 4e8t

4e8t

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)

SM: EPE EPE EPE EPE EPE SPM SPM

Structure of complex 4e8v

4e8v

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+

SM: EPE EPE EPE EPE

Structure of complex 4faq

4faq

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon

SM: EPE EPE EPE EPE EPE SPM SPM

Structure of complex 4far

4far

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon

SM: EPE EPE EPE SPM SPM

Structure of complex 4fau

4fau

Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon

SM: EPE EPE EPE SPM

Structure of complex 4faw

4faw

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment

SM: EPE EPE SPM

Structure of complex 4fax

4fax

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+

SM: EPE EPE EPE

Structure of complex 4fb0

4fb0

Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+

SM: EPE EPE EPE EPE SPM

Structure of complex 4r0d

4r0d

Crystal structure of a eukaryotic group II intron lariat

SM: SPM SPM

Structure of complex 6ar1

6ar1

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Nat))

SM: DTP DTP

Structure of complex 6ar3

6ar3

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Se-Met))

SM: DTP DTP

Structure of complex 6chr

6chr

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

SM: SPM

Structure of complex 6g7z

6g7z

Lariat-capping ribozyme with a shortened DP2 stem loop

SM: MES

Structure of complex 6gyv

6gyv

Lariat-capping ribozyme (circular permutation form)

SM: MES

Structure of complex 6t3k

6t3k

Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of K+, Mg2+ and 5'-exon

SM: EPE EPE EPE SPM SPM

Structure of complex 6t3n

6t3n

Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of Na+, Mg2+ and 5'-exon

SM: EPE EPE EPE

Structure of complex 6t3r

6t3r

Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of K+, Mg2+ and 5'-exon

SM: EPE EPE SPM SPM

Structure of complex 6t3s

6t3s

Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exon

SM: EPE EPE EPE

Structure of complex 7dwh

7dwh

Complex structure of SAM-dependent methyltransferase ribozyme

SM: SAM SAM

Structure of complex 7yc8

7yc8

Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the first-step self-splicing

SM: GTP

Structure of complex 7ycg

7ycg

Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the first-step self-splicing

SM: GTP

Structure of complex 7yci

7yci

Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the first-step self-splicing

SM: GTP

Structure of complex 8i7n

8i7n

The Tet-S1 state of G264A mutated Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside

SM: OJI

Structure of complex 8ols

8ols

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and intronistat B

SM: EPE EPE SPM SPM VTE

Structure of complex 8olv

8olv

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and ARN25850

SM: EPE EPE SPM VTR

Structure of complex 8oly

8oly

Structure of Oceanobacillus iheyensis group II intron post first step of splicing in the presence of K+, Mg2+ and intronistat B

SM: EPE EPE EPE SPM SPM

Structure of complex 8olz

8olz

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and intronistat B after 2h30 soaking

SM: EPE SPM VTE

Structure of complex 8om0

8om0

Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+ and intronistat B

SM: GDE

Structure of complex 8ruh

8ruh

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon

SM: EPE

Structure of complex 8rui

8rui

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and intronistat B after 1h soaking

SM: VTE

Structure of complex 8ruj

8ruj

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and ARN25850 after 1h soaking

SM: VTR

Structure of complex 8ruk

8ruk

Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+, and ARN25850

SM: VTR

Structure of complex 8rul

8rul

Structure of Oceanobacillus iheyensis group II intron in the presence of Li+ and Mg2+

SM: EPE EPE

Structure of complex 8rum

8rum

Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+, and intronistat B

SM: VTE