Complex 4e8v
System information
| Experimental technique | X-ray |
| Experimental resolution | 4.00 |
| System mass | 135.12 kDa |
| Deposition year | 2012 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Oceanobacillus |
| RCSB PDB Entry | 4e8v |
| Reference | Marcia Marco, Pyle Anna Marie. . Visualizing Group II Intron Catalysis through the Stages of Splicing Cell |
| Equivalence Class |
NR_all_35054.12
BGSU version: 4.49 |
| Compound | EPE |
| Residue | . / 452 |
| Chain | AB / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 147.49 Å3 |
| Hydrophobicity | 0.002 |
| Hydrophilicity | 0.901 |
| Buriedness | 0.460 |
| Don/acc character | 4.717 |
| SiteScore | 1.018 |
| D Score | 0.922 |
| Kd | — |
| Compound | EPE |
| Residue | . / 453 |
| Chain | BB / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | EPE |
| Residue | . / 455 |
| Chain | DB / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 53.17 Å3 |
| Hydrophobicity | 0.085 |
| Hydrophilicity | 1.086 |
| Buriedness | 0.603 |
| Don/acc character | 3.478 |
| SiteScore | 0.596 |
| D Score | 0.319 |
| Kd | — |
| Compound | EPE |
| Residue | . / 456 |
| Chain | EB / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 72.72 Å3 |
| Hydrophobicity | 0.016 |
| Hydrophilicity | 0.990 |
| Buriedness | 0.624 |
| Don/acc character | 2.013 |
| SiteScore | 0.713 |
| D Score | 0.482 |
| Kd | — |