HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4e8t

System information

Experimental technique X-ray
Experimental resolution 3.34
System mass 133.50 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 2
Organism Oceanobacillus
RCSB PDB Entry 4e8t
Reference Marcia Marco, Pyle Anna Marie. . Visualizing Group II Intron Catalysis through the Stages of Splicing Cell

Compound EPE
Residue . / 442
Chain RA / A
Non-redundant False
Interacting RNA chains A/A
Volume 65.86 Å3
Hydrophobicity 0.176
Hydrophilicity 0.929
Buriedness 0.519
Don/acc character 8.273
SiteScore 0.423
D Score 0.334

Compound EPE
Residue . / 444
Chain TA / A
Non-redundant False
Interacting RNA chains A/A
Volume 37.04 Å3
Hydrophobicity 0.257
Hydrophilicity 0.759
Buriedness 0.520
Don/acc character 1.231
SiteScore 0.366
D Score 0.275

Compound EPE
Residue . / 445
Chain UA / A
Non-redundant False
Interacting RNA chains A/A
Volume 145.77 Å3
Hydrophobicity 0.230
Hydrophilicity 1.422
Buriedness 0.696
Don/acc character 1.512
SiteScore 0.693
D Score 0.502

Compound EPE
Residue . / 446
Chain VA / A
Non-redundant False
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound EPE
Residue . / 447
Chain WA / A
Non-redundant False
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 440
Chain PA / A
Non-redundant False
Interacting RNA chains A/A
Volume 201.00 Å3
Hydrophobicity 0.166
Hydrophilicity 1.144
Buriedness 0.693
Don/acc character 0.587
SiteScore 0.672
D Score 0.566

Compound SPM
Residue . / 441
Chain QA / A
Non-redundant False
Interacting RNA chains A/A
Volume 220.21 Å3
Hydrophobicity 0.016
Hydrophilicity 1.390
Buriedness 0.684
Don/acc character 1.100
SiteScore 0.786
D Score 0.635