HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4e8m

System information

Experimental technique X-ray
Experimental resolution 3.50
System mass 131.11 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 1
Organism Oceanobacillus
RCSB PDB Entry 4e8m
Reference Marcia Marco, Pyle Anna Marie. . Visualizing Group II Intron Catalysis through the Stages of Splicing Cell

Compound EPE
Residue . / 445
Chain TA / A
Non-redundant False
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound EPE
Residue . / 446
Chain UA / A
Non-redundant False
Interacting RNA chains A/A
Volume 36.01 Å3
Hydrophobicity 0.377
Hydrophilicity 1.222
Buriedness 0.598
Don/acc character 0.798
SiteScore 0.420
D Score 0.242

Compound EPE
Residue . / 447
Chain VA / A
Non-redundant False
Interacting RNA chains A/A
Volume 138.23 Å3
Hydrophobicity 0.000
Hydrophilicity 1.192
Buriedness 0.626
Don/acc character 1.164
SiteScore 0.646
D Score 0.535

Compound EPE
Residue . / 448
Chain WA / A
Non-redundant False
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound EPE
Residue . / 450
Chain YA / A
Non-redundant False
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 443
Chain RA / A
Non-redundant False
Interacting RNA chains A/A
Volume 388.28 Å3
Hydrophobicity 0.195
Hydrophilicity 1.185
Buriedness 0.638
Don/acc character 0.715
SiteScore 0.942
D Score 0.913

Compound SPM
Residue . / 444
Chain SA / A
Non-redundant False
Interacting RNA chains A/A
Volume 272.34 Å3
Hydrophobicity 0.084
Hydrophilicity 1.466
Buriedness 0.709
Don/acc character 1.188
SiteScore 0.950
D Score 0.814