Complex 4e8m
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.50 |
| System mass | 131.11 kDa |
| Deposition year | 2012 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Oceanobacillus |
| RCSB PDB Entry | 4e8m |
| Reference | Marcia Marco, Pyle Anna Marie. . Visualizing Group II Intron Catalysis through the Stages of Splicing Cell |
| Equivalence Class |
NR_all_35054.12
BGSU version: 4.49 |
| Compound | EPE |
| Residue | . / 445 |
| Chain | TA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 58.65 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.095 |
| Buriedness | 0.586 |
| Don/acc character | 2.452 |
| SiteScore | 0.635 |
| D Score | 0.371 |
| Kd | — |
| Compound | EPE |
| Residue | . / 446 |
| Chain | UA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 203.06 Å3 |
| Hydrophobicity | 0.036 |
| Hydrophilicity | 0.691 |
| Buriedness | 0.530 |
| Don/acc character | 3.072 |
| SiteScore | 1.105 |
| D Score | 1.032 |
| Kd | — |
| Compound | EPE |
| Residue | . / 447 |
| Chain | VA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 155.38 Å3 |
| Hydrophobicity | 0.041 |
| Hydrophilicity | 1.032 |
| Buriedness | 0.627 |
| Don/acc character | 2.307 |
| SiteScore | 0.780 |
| D Score | 0.563 |
| Kd | — |
| Compound | EPE |
| Residue | . / 448 |
| Chain | WA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 155.38 Å3 |
| Hydrophobicity | 0.014 |
| Hydrophilicity | 0.688 |
| Buriedness | 0.475 |
| Don/acc character | 3.518 |
| SiteScore | 1.069 |
| D Score | 1.001 |
| Kd | — |
| Compound | EPE |
| Residue | . / 450 |
| Chain | YA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 134.46 Å3 |
| Hydrophobicity | 0.035 |
| Hydrophilicity | 0.790 |
| Buriedness | 0.519 |
| Don/acc character | 3.119 |
| SiteScore | 1.078 |
| D Score | 0.994 |
| Kd | — |
| Compound | SPM |
| Residue | . / 443 |
| Chain | RA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 297.72 Å3 |
| Hydrophobicity | 0.117 |
| Hydrophilicity | 1.033 |
| Buriedness | 0.659 |
| Don/acc character | 1.385 |
| SiteScore | 0.956 |
| D Score | 0.781 |
| Kd | — |
| Compound | SPM |
| Residue | . / 444 |
| Chain | SA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 280.23 Å3 |
| Hydrophobicity | 0.071 |
| Hydrophilicity | 1.146 |
| Buriedness | 0.686 |
| Don/acc character | 2.286 |
| SiteScore | 1.027 |
| D Score | 0.830 |
| Kd | — |