Complex 4e8m
System information
Experimental technique | X-ray |
Experimental resolution | 3.50 |
System mass | 131.11 kDa |
Deposition year | 2012 |
Molecule type | RNA |
# RNA entities | 1 |
Organism | Oceanobacillus |
RCSB PDB Entry | 4e8m |
Reference | Marcia Marco, Pyle Anna Marie. . Visualizing Group II Intron Catalysis through the Stages of Splicing Cell |
Compound | EPE |
Residue | . / 445 |
Chain | TA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | - |
Hydrophobicity | - |
Hydrophilicity | - |
Buriedness | - |
Don/acc character | - |
SiteScore | - |
D Score | - |
Compound | EPE |
Residue | . / 446 |
Chain | UA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 36.01 Å3 |
Hydrophobicity | 0.377 |
Hydrophilicity | 1.222 |
Buriedness | 0.598 |
Don/acc character | 0.798 |
SiteScore | 0.420 |
D Score | 0.242 |
Compound | EPE |
Residue | . / 447 |
Chain | VA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 138.23 Å3 |
Hydrophobicity | 0.000 |
Hydrophilicity | 1.192 |
Buriedness | 0.626 |
Don/acc character | 1.164 |
SiteScore | 0.646 |
D Score | 0.535 |
Compound | EPE |
Residue | . / 448 |
Chain | WA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | - |
Hydrophobicity | - |
Hydrophilicity | - |
Buriedness | - |
Don/acc character | - |
SiteScore | - |
D Score | - |
Compound | EPE |
Residue | . / 450 |
Chain | YA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | - |
Hydrophobicity | - |
Hydrophilicity | - |
Buriedness | - |
Don/acc character | - |
SiteScore | - |
D Score | - |
Compound | SPM |
Residue | . / 443 |
Chain | RA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 388.28 Å3 |
Hydrophobicity | 0.195 |
Hydrophilicity | 1.185 |
Buriedness | 0.638 |
Don/acc character | 0.715 |
SiteScore | 0.942 |
D Score | 0.913 |
Compound | SPM |
Residue | . / 444 |
Chain | SA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 272.34 Å3 |
Hydrophobicity | 0.084 |
Hydrophilicity | 1.466 |
Buriedness | 0.709 |
Don/acc character | 1.188 |
SiteScore | 0.950 |
D Score | 0.814 |