Complex 6ar1
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.01 |
| System mass | 116.36 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/DNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 6ar1 |
| Reference | Stamos Jennifer L., Lentzsch Alfred M., Lambowitz Alan M.. 2017. Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications Molecular Cell |
| Equivalence Class |
NR_all_10432.2
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | DTP |
| Residue | . / 501 |
| Chain | G / A |
| Non-redundant | True |
| Interacting RNA chains | C/C |
| RNA environment detailled | DNA, protein, ion |
| RNA environment global | RNA/DNA/Protein |
| RNA family chains | C/C: ribozyme |
| RNA family global | ribozyme |
| Volume | 606.08 Å3 |
| Hydrophobicity | 0.277 |
| Hydrophilicity | 1.649 |
| Buriedness | 0.843 |
| Don/acc character | 0.583 |
| SiteScore | 1.097 |
| D Score | 0.908 |
| Kd | — |
| Compound | DTP |
| Residue | . / 501 |
| Chain | J / D |
| Non-redundant | True |
| Interacting RNA chains | F/F |
| RNA environment detailled | DNA, protein, ion |
| RNA environment global | RNA/DNA/Protein |
| RNA family chains | F/F: ribozyme |
| RNA family global | ribozyme |
| Volume | 513.47 Å3 |
| Hydrophobicity | 0.298 |
| Hydrophilicity | 1.562 |
| Buriedness | 0.826 |
| Don/acc character | 0.624 |
| SiteScore | 1.085 |
| D Score | 0.926 |
| Kd | — |