Complex 3g9c
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.90 |
| System mass | 242.21 kDa |
| Deposition year | 2009 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 3g9c |
| Reference | Cochrane Jesse C., Lipchock Sarah V., Smith Kathryn D., Strobel Scott A.. 2009. Structural and Chemical Basis for Glucosamine 6-Phosphate Binding and Activation of the glmS Ribozyme Biochemistry |
| Equivalence Class |
NR_all_17906.2
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | GLP |
| Residue | . / 5001 |
| Chain | M / E |
| Non-redundant | True |
| Interacting RNA chains | C/P, B/E |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/E: ribozyme, C/P: ribozyme |
| RNA family global | ribozyme |
| Volume | 461.34 Å3 |
| Hydrophobicity | 0.015 |
| Hydrophilicity | 1.526 |
| Buriedness | 0.739 |
| Don/acc character | 0.779 |
| SiteScore | 1.178 |
| D Score | 0.886 |
| Kd | — |