HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6t3k

System information

Experimental technique X-ray
Experimental resolution 3.44
System mass 132.10 kDa
Deposition year 2019
Molecule type RNA
# RNA entities 1
Organism Oceanobacillus
RCSB PDB Entry 6t3k
Reference Manigrasso Jacopo, Chillón Isabel, Genna Vito, Vidossich Pietro, Somarowthu Srinivas, Pyle Anna Marie, De Vivo Marco, Marcia Marco. . Visualizing group II intron dynamics between the first and second steps of splicing Nature Communications

Compound EPE
Residue . / 444
Chain TA / A
Non-redundant False
Interacting RNA chains A/A
Volume 76.49 Å3
Hydrophobicity 0.000
Hydrophilicity 1.239
Buriedness 0.621
Don/acc character 2.976
SiteScore 0.526
D Score 0.367

Compound EPE
Residue . / 445
Chain UA / A
Non-redundant False
Interacting RNA chains A/A
Volume 38.42 Å3
Hydrophobicity 0.000
Hydrophilicity 1.067
Buriedness 0.522
Don/acc character 7.278
SiteScore 0.313
D Score 0.176

Compound EPE
Residue . / 448
Chain XA / A
Non-redundant False
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 449
Chain YA / A
Non-redundant False
Interacting RNA chains A/A
Volume 253.13 Å3
Hydrophobicity 0.050
Hydrophilicity 1.023
Buriedness 0.640
Don/acc character 1.095
SiteScore 0.671
D Score 0.614

Compound SPM
Residue . / 450
Chain ZA / A
Non-redundant False
Interacting RNA chains A/A
Volume 263.08 Å3
Hydrophobicity 0.066
Hydrophilicity 1.079
Buriedness 0.660
Don/acc character 2.724
SiteScore 0.656
D Score 0.576