Complex 6t3k
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.44 |
| System mass | 132.10 kDa |
| Deposition year | 2019 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Oceanobacillus |
| RCSB PDB Entry | 6t3k |
| Reference | Manigrasso Jacopo, Chillón Isabel, Genna Vito, Vidossich Pietro, Somarowthu Srinivas, Pyle Anna Marie, De Vivo Marco, Marcia Marco. . Visualizing group II intron dynamics between the first and second steps of splicing Nature Communications |
| Compound | EPE |
| Residue | . / 444 |
| Chain | TA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | 76.49 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.239 |
| Buriedness | 0.621 |
| Don/acc character | 2.976 |
| SiteScore | 0.526 |
| D Score | 0.367 |
| Compound | EPE |
| Residue | . / 445 |
| Chain | UA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | 38.42 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.067 |
| Buriedness | 0.522 |
| Don/acc character | 7.278 |
| SiteScore | 0.313 |
| D Score | 0.176 |
| Compound | EPE |
| Residue | . / 448 |
| Chain | XA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Compound | SPM |
| Residue | . / 449 |
| Chain | YA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | 253.13 Å3 |
| Hydrophobicity | 0.050 |
| Hydrophilicity | 1.023 |
| Buriedness | 0.640 |
| Don/acc character | 1.095 |
| SiteScore | 0.671 |
| D Score | 0.614 |
| Compound | SPM |
| Residue | . / 450 |
| Chain | ZA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | 263.08 Å3 |
| Hydrophobicity | 0.066 |
| Hydrophilicity | 1.079 |
| Buriedness | 0.660 |
| Don/acc character | 2.724 |
| SiteScore | 0.656 |
| D Score | 0.576 |