Complex 6t3k
System information
Experimental technique | X-ray |
Experimental resolution | 3.44 |
System mass | 132.10 kDa |
Deposition year | 2019 |
Molecule type | RNA |
# RNA entities | 1 |
Organism | Oceanobacillus |
RCSB PDB Entry | 6t3k |
Reference | Manigrasso Jacopo, Chillón Isabel, Genna Vito, Vidossich Pietro, Somarowthu Srinivas, Pyle Anna Marie, De Vivo Marco, Marcia Marco. . Visualizing group II intron dynamics between the first and second steps of splicing Nature Communications |
Compound | EPE |
Residue | . / 444 |
Chain | TA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 76.49 Å3 |
Hydrophobicity | 0.000 |
Hydrophilicity | 1.239 |
Buriedness | 0.621 |
Don/acc character | 2.976 |
SiteScore | 0.526 |
D Score | 0.367 |
Compound | EPE |
Residue | . / 445 |
Chain | UA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 38.42 Å3 |
Hydrophobicity | 0.000 |
Hydrophilicity | 1.067 |
Buriedness | 0.522 |
Don/acc character | 7.278 |
SiteScore | 0.313 |
D Score | 0.176 |
Compound | EPE |
Residue | . / 448 |
Chain | XA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | - |
Hydrophobicity | - |
Hydrophilicity | - |
Buriedness | - |
Don/acc character | - |
SiteScore | - |
D Score | - |
Compound | SPM |
Residue | . / 449 |
Chain | YA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 253.13 Å3 |
Hydrophobicity | 0.050 |
Hydrophilicity | 1.023 |
Buriedness | 0.640 |
Don/acc character | 1.095 |
SiteScore | 0.671 |
D Score | 0.614 |
Compound | SPM |
Residue | . / 450 |
Chain | ZA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 263.08 Å3 |
Hydrophobicity | 0.066 |
Hydrophilicity | 1.079 |
Buriedness | 0.660 |
Don/acc character | 2.724 |
SiteScore | 0.656 |
D Score | 0.576 |