HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 2gcv

System information

Experimental technique X-ray
Experimental resolution 2.10
System mass 49.37 kDa
Deposition year 2006
Molecule type RNA
# RNA entities 1
Organism Caldanaerobacter
RCSB PDB Entry 2gcv
Reference Klein Daniel J., Ferré-D'Amaré Adrian R.. . Structural Basis of glmS Ribozyme Activation by Glucosamine-6-Phosphate Science
Equivalence Class NR_all_83979.2
BGSU version: 4.48

Compound MES
Residue . / 501
Chain C / A
Non-redundant True
Interacting RNA chains A/A, B/B
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains A/A: ribozyme, B/B: ribozyme
RNA family global ribozyme
Volume 288.12 Å3
Hydrophobicity 0.119
Hydrophilicity 1.421
Buriedness 0.770
Don/acc character 0.673
SiteScore 1.198
D Score 0.939
Kd

Compound MES
Residue . / 502
Chain H / B
Non-redundant False
Interacting RNA chains A/A, B/B
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains A/A: ribozyme, B/B: ribozyme
RNA family global ribozyme
Volume 175.96 Å3
Hydrophobicity 0.000
Hydrophilicity 1.567
Buriedness 0.684
Don/acc character 0.894
SiteScore 1.063
D Score 0.740
Kd