Complex 1ykv
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.30 |
| System mass | 32.44 kDa |
| Deposition year | 2005 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 1ykv |
| Reference | Serganov Alexander, Keiper Sonja, Malinina Lucy, Tereshko Valentina, Skripkin Eugene, Höbartner Claudia, Polonskaia Anna, Phan Anh Tuân, Wombacher Richard, Micura Ronald, Dauter Zbigniew, Jäschke Andres, Patel Dinshaw J. . Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation Nature Structural & Molecular Biology |
| Compound | DAI |
| Residue | . / 100 |
| Chain | E / A |
| Non-redundant | True |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme, B/B: ribozyme |
| RNA family global | ribozyme |
| Volume | 589.27 Å3 |
| Hydrophobicity | 0.915 |
| Hydrophilicity | 0.889 |
| Buriedness | 0.742 |
| Don/acc character | 1.601 |
| SiteScore | 1.209 |
| D Score | 1.096 |
| Kd | 10uM |
| Compound | DAI |
| Residue | . / 100 |
| Chain | J / C |
| Non-redundant | False |
| Interacting RNA chains | C/C, D/D |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/C: ribozyme, D/D: ribozyme |
| RNA family global | ribozyme |
| Volume | 623.57 Å3 |
| Hydrophobicity | 0.849 |
| Hydrophilicity | 0.891 |
| Buriedness | 0.722 |
| Don/acc character | 1.661 |
| SiteScore | 1.195 |
| D Score | 1.082 |
| Kd | 10uM |