HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4e8k

System information

Experimental technique X-ray
Experimental resolution 3.03
System mass 133.91 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 2
Organism Oceanobacillus
RCSB PDB Entry 4e8k
Reference Marcia Marco, Pyle Anna Marie. . Visualizing Group II Intron Catalysis through the Stages of Splicing Cell

Compound EPE
Residue . / 441
Chain QA / A
Non-redundant False
Interacting RNA chains A/A
Volume 72.37 Å3
Hydrophobicity 0.039
Hydrophilicity 1.087
Buriedness 0.573
Don/acc character 2.649
SiteScore 0.437
D Score 0.315

Compound EPE
Residue . / 443
Chain SA / A
Non-redundant False
Interacting RNA chains A/A
Volume 57.97 Å3
Hydrophobicity 0.014
Hydrophilicity 1.130
Buriedness 0.590
Don/acc character 4.244
SiteScore 0.514
D Score 0.395

Compound EPE
Residue . / 446
Chain VA / A
Non-redundant False
Interacting RNA chains A/A
Volume 186.25 Å3
Hydrophobicity 0.042
Hydrophilicity 1.172
Buriedness 0.635
Don/acc character 1.217
SiteScore 0.700
D Score 0.608

Compound EPE
Residue . / 447
Chain WA / A
Non-redundant True
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound EPE
Residue . / 448
Chain XA / A
Non-redundant True
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 445
Chain UA / A
Non-redundant False
Interacting RNA chains A/A
Volume 243.53 Å3
Hydrophobicity 0.028
Hydrophilicity 1.393
Buriedness 0.704
Don/acc character 1.141
SiteScore 0.867
D Score 0.732