HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4e8k

System information

Experimental technique X-ray
Experimental resolution 3.03
System mass 133.91 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 2
Organism Oceanobacillus
RCSB PDB Entry 4e8k
Reference Marcia Marco, Pyle Anna Marie. . Visualizing Group II Intron Catalysis through the Stages of Splicing Cell

Compound EPE
Residue . / 441
Chain QA / A
Non-redundant False
Interacting RNA chains A/A
Volume 84.03 Å3
Hydrophobicity 0.041
Hydrophilicity 0.956
Buriedness 0.532
Don/acc character 5.821
SiteScore 0.379
D Score 0.273

Compound EPE
Residue . / 443
Chain SA / A
Non-redundant True
Interacting RNA chains A/A
Volume 59.68 Å3
Hydrophobicity 0.165
Hydrophilicity 0.978
Buriedness 0.639
Don/acc character 0.930
SiteScore 0.523
D Score 0.428

Compound EPE
Residue . / 446
Chain VA / A
Non-redundant True
Interacting RNA chains A/A
Volume 209.92 Å3
Hydrophobicity 0.022
Hydrophilicity 1.030
Buriedness 0.625
Don/acc character 1.814
SiteScore 0.690
D Score 0.641

Compound EPE
Residue . / 447
Chain WA / A
Non-redundant True
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound EPE
Residue . / 448
Chain XA / A
Non-redundant False
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 445
Chain UA / A
Non-redundant False
Interacting RNA chains A/A
Volume 253.48 Å3
Hydrophobicity 0.110
Hydrophilicity 1.128
Buriedness 0.698
Don/acc character 2.198
SiteScore 0.811
D Score 0.748