Complex 4e8k
System information
Experimental technique | X-ray |
Experimental resolution | 3.03 |
System mass | 133.91 kDa |
Deposition year | 2012 |
Molecule type | RNA |
# RNA entities | 2 |
Organism | Oceanobacillus |
RCSB PDB Entry | 4e8k |
Reference | Marcia Marco, Pyle Anna Marie. . Visualizing Group II Intron Catalysis through the Stages of Splicing Cell |
Compound | EPE |
Residue | . / 441 |
Chain | QA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 84.03 Å3 |
Hydrophobicity | 0.041 |
Hydrophilicity | 0.956 |
Buriedness | 0.532 |
Don/acc character | 5.821 |
SiteScore | 0.379 |
D Score | 0.273 |
Compound | EPE |
Residue | . / 443 |
Chain | SA / A |
Non-redundant | True |
Interacting RNA chains | A/A |
Volume | 59.68 Å3 |
Hydrophobicity | 0.165 |
Hydrophilicity | 0.978 |
Buriedness | 0.639 |
Don/acc character | 0.930 |
SiteScore | 0.523 |
D Score | 0.428 |
Compound | EPE |
Residue | . / 446 |
Chain | VA / A |
Non-redundant | True |
Interacting RNA chains | A/A |
Volume | 209.92 Å3 |
Hydrophobicity | 0.022 |
Hydrophilicity | 1.030 |
Buriedness | 0.625 |
Don/acc character | 1.814 |
SiteScore | 0.690 |
D Score | 0.641 |
Compound | EPE |
Residue | . / 447 |
Chain | WA / A |
Non-redundant | True |
Interacting RNA chains | A/A |
Volume | - |
Hydrophobicity | - |
Hydrophilicity | - |
Buriedness | - |
Don/acc character | - |
SiteScore | - |
D Score | - |
Compound | EPE |
Residue | . / 448 |
Chain | XA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | - |
Hydrophobicity | - |
Hydrophilicity | - |
Buriedness | - |
Don/acc character | - |
SiteScore | - |
D Score | - |
Compound | SPM |
Residue | . / 445 |
Chain | UA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 253.48 Å3 |
Hydrophobicity | 0.110 |
Hydrophilicity | 1.128 |
Buriedness | 0.698 |
Don/acc character | 2.198 |
SiteScore | 0.811 |
D Score | 0.748 |