HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6t3r

System information

Experimental technique X-ray
Experimental resolution 3.57
System mass 132.25 kDa
Deposition year 2019
Molecule type RNA
# RNA entities 1
Organism Oceanobacillus
RCSB PDB Entry 6t3r
Reference Manigrasso Jacopo, Chillón Isabel, Genna Vito, Vidossich Pietro, Somarowthu Srinivas, Pyle Anna Marie, De Vivo Marco, Marcia Marco. . Visualizing group II intron dynamics between the first and second steps of splicing Nature Communications

Compound EPE
Residue . / 447
Chain WA / A
Non-redundant False
Interacting RNA chains A/A
Volume 117.65 Å3
Hydrophobicity 0.012
Hydrophilicity 1.192
Buriedness 0.671
Don/acc character 1.977
SiteScore 0.533
D Score 0.378

Compound SPM
Residue . / 452
Chain BB / A
Non-redundant False
Interacting RNA chains A/A
Volume 241.47 Å3
Hydrophobicity 0.126
Hydrophilicity 0.971
Buriedness 0.609
Don/acc character 1.043
SiteScore 0.648
D Score 0.597

Compound SPM
Residue . / 453
Chain CB / A
Non-redundant False
Interacting RNA chains A/A
Volume 204.43 Å3
Hydrophobicity 0.042
Hydrophilicity 1.258
Buriedness 0.723
Don/acc character 2.010
SiteScore 0.643
D Score 0.484