Complex 6t3r
System information
Experimental technique | X-ray |
Experimental resolution | 3.57 |
System mass | 132.25 kDa |
Deposition year | 2019 |
Molecule type | RNA |
# RNA entities | 1 |
Organism | Oceanobacillus |
RCSB PDB Entry | 6t3r |
Reference | Manigrasso Jacopo, Chillón Isabel, Genna Vito, Vidossich Pietro, Somarowthu Srinivas, Pyle Anna Marie, De Vivo Marco, Marcia Marco. . Visualizing group II intron dynamics between the first and second steps of splicing Nature Communications |
Compound | EPE |
Residue | . / 447 |
Chain | WA / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 117.65 Å3 |
Hydrophobicity | 0.012 |
Hydrophilicity | 1.192 |
Buriedness | 0.671 |
Don/acc character | 1.977 |
SiteScore | 0.533 |
D Score | 0.378 |
Compound | SPM |
Residue | . / 452 |
Chain | BB / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 241.47 Å3 |
Hydrophobicity | 0.126 |
Hydrophilicity | 0.971 |
Buriedness | 0.609 |
Don/acc character | 1.043 |
SiteScore | 0.648 |
D Score | 0.597 |
Compound | SPM |
Residue | . / 453 |
Chain | CB / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 204.43 Å3 |
Hydrophobicity | 0.042 |
Hydrophilicity | 1.258 |
Buriedness | 0.723 |
Don/acc character | 2.010 |
SiteScore | 0.643 |
D Score | 0.484 |