HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4e8p

System information

Experimental technique X-ray
Experimental resolution 3.28
System mass 131.47 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 1
Organism Oceanobacillus
RCSB PDB Entry 4e8p
Reference Marcia Marco, Pyle Anna Marie. . Visualizing Group II Intron Catalysis through the Stages of Splicing Cell

Compound EPE
Residue . / 447
Chain VA / A
Non-redundant False
Interacting RNA chains A/A
Volume 76.49 Å3
Hydrophobicity 0.011
Hydrophilicity 1.038
Buriedness 0.564
Don/acc character 4.961
SiteScore 0.489
D Score 0.399

Compound EPE
Residue . / 448
Chain WA / A
Non-redundant False
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound EPE
Residue . / 449
Chain XA / A
Non-redundant False
Interacting RNA chains A/A
Volume 65.86 Å3
Hydrophobicity 0.472
Hydrophilicity 0.820
Buriedness 0.655
Don/acc character 1.041
SiteScore 0.534
D Score 0.451

Compound EPE
Residue . / 451
Chain ZA / A
Non-redundant False
Interacting RNA chains A/A
Volume 132.40 Å3
Hydrophobicity 0.000
Hydrophilicity 1.057
Buriedness 0.598
Don/acc character 2.524
SiteScore 0.608
D Score 0.538

Compound SPM
Residue . / 446
Chain UA / A
Non-redundant False
Interacting RNA chains A/A
Volume 186.94 Å3
Hydrophobicity 0.278
Hydrophilicity 0.791
Buriedness 0.627
Don/acc character 1.066
SiteScore 0.619
D Score 0.569