HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4faq

System information

Experimental technique X-ray
Experimental resolution 3.11
System mass 132.13 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 1
Organism Oceanobacillus
RCSB PDB Entry 4faq
Reference Marcia Marco, Pyle Anna Marie. . Visualizing Group II Intron Catalysis through the Stages of Splicing Cell

Compound EPE
Residue . / 447
Chain VA / A
Non-redundant False
Interacting RNA chains A/A
Volume 79.92 Å3
Hydrophobicity 0.131
Hydrophilicity 0.950
Buriedness 0.550
Don/acc character 1.911
SiteScore 0.505
D Score 0.430

Compound EPE
Residue . / 448
Chain WA / A
Non-redundant False
Interacting RNA chains A/A
Volume 40.13 Å3
Hydrophobicity 0.031
Hydrophilicity 1.045
Buriedness 0.580
Don/acc character 4.959
SiteScore 0.382
D Score 0.256

Compound EPE
Residue . / 450
Chain YA / A
Non-redundant False
Interacting RNA chains A/A
Volume 214.38 Å3
Hydrophobicity 0.222
Hydrophilicity 0.804
Buriedness 0.681
Don/acc character 3.732
SiteScore 0.612
D Score 0.545

Compound EPE
Residue . / 451
Chain ZA / A
Non-redundant False
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound EPE
Residue . / 452
Chain AB / A
Non-redundant False
Interacting RNA chains A/A
Volume 61.40 Å3
Hydrophobicity 0.123
Hydrophilicity 1.010
Buriedness 0.627
Don/acc character 1.857
SiteScore 0.433
D Score 0.313

Compound SPM
Residue . / 445
Chain TA / A
Non-redundant False
Interacting RNA chains A/A
Volume 80.95 Å3
Hydrophobicity 0.175
Hydrophilicity 1.188
Buriedness 0.607
Don/acc character 1.046
SiteScore 0.526
D Score 0.387

Compound SPM
Residue . / 446
Chain UA / A
Non-redundant False
Interacting RNA chains A/A
Volume 261.02 Å3
Hydrophobicity 0.124
Hydrophilicity 1.223
Buriedness 0.661
Don/acc character 1.125
SiteScore 0.864
D Score 0.796