HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4faq

System information

Experimental technique	X-ray
Experimental resolution	3.11
System mass	132.13 kDa
Deposition year	2012
Molecule type	RNA
# RNA entities	1
Organism	Oceanobacillus
RCSB PDB Entry	4faq
Reference	Marcia Marco, Pyle Anna Marie. . Visualizing Group II Intron Catalysis through the Stages of Splicing Cell

Pocket 1

Compound	EPE
Residue	. / 447
Chain	VA / A
Non-redundant	False
Interacting RNA chains	A/A
Volume	83.35 Å³
Hydrophobicity	0.033
Hydrophilicity	0.951
Buriedness	0.569
Don/acc character	3.324
SiteScore	0.580
D Score	0.329

Pocket 2

Compound	EPE
Residue	. / 448
Chain	WA / A
Non-redundant	False
Interacting RNA chains	A/A
Volume	-
Hydrophobicity	-
Hydrophilicity	-
Buriedness	-
Don/acc character	-
SiteScore	-
D Score	-

Pocket 3

Compound	EPE
Residue	. / 450
Chain	YA / A
Non-redundant	False
Interacting RNA chains	A/A
Volume	226.04 Å³
Hydrophobicity	0.209
Hydrophilicity	0.767
Buriedness	0.682
Don/acc character	1.974
SiteScore	0.795
D Score	0.590

Pocket 4

Compound	EPE
Residue	. / 451
Chain	ZA / A
Non-redundant	True
Interacting RNA chains	A/A
Volume	72.72 Å³
Hydrophobicity	0.004
Hydrophilicity	0.681
Buriedness	0.462
Don/acc character	3.036
SiteScore	0.820
D Score	0.686

Pocket 5

Compound	EPE
Residue	. / 452
Chain	AB / A
Non-redundant	False
Interacting RNA chains	A/A
Volume	66.54 Å³
Hydrophobicity	0.023
Hydrophilicity	1.187
Buriedness	0.636
Don/acc character	2.489
SiteScore	0.583
D Score	0.261

Pocket 6

Compound	SPM
Residue	. / 445
Chain	TA / A
Non-redundant	False
Interacting RNA chains	A/A
Volume	-
Hydrophobicity	-
Hydrophilicity	-
Buriedness	-
Don/acc character	-
SiteScore	-
D Score	-

Pocket 7

Compound	SPM
Residue	. / 446
Chain	UA / A
Non-redundant	False
Interacting RNA chains	A/A
Volume	275.43 Å³
Hydrophobicity	0.168
Hydrophilicity	0.963
Buriedness	0.649
Don/acc character	2.653
SiteScore	1.003
D Score	0.850