Complex 38jd
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.92 |
| System mass | 83.35 kDa |
| Deposition year | 2026 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 38jd |
| Reference | Strutzenberg Timothy S., Horning David P., Cochrane Wesley G., Andrade Leonardo, Han Xuan, Joyce Gerald F., Lyumkis Dmitry. 2026. Structure of an RNA polymerase ribozyme replication complex preprint (openRxiv) |
| Equivalence Class |
NR_all_71798.1
BGSU version: 4.56 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | APC |
| Residue | . / 214 |
| Chain | Q / A |
| Non-redundant | False |
| Interacting RNA chains | A/A, B/B, C/C |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme, B/B: ribozyme, C/C: ribozyme |
| RNA family global | ribozyme |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |