Complex 6chr
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.70 |
| System mass | 208.64 kDa |
| Deposition year | 2018 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Pylaiella |
| RCSB PDB Entry | 6chr |
| Reference | Chan Russell T., Peters Jessica K., Robart Aaron R., Wiryaman Timothy, Rajashankar Kanagalaghatta R., Toor Navtej. 2018. Structural basis for the second step of group II intron splicing Nature Communications |
| Equivalence Class |
NR_all_18903.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SPM |
| Residue | . / 741 |
| Chain | QA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 359.12 Å3 |
| Hydrophobicity | 0.071 |
| Hydrophilicity | 1.040 |
| Buriedness | 0.631 |
| Don/acc character | 1.504 |
| SiteScore | 1.011 |
| D Score | 0.859 |
| Kd | — |