Complex 6g7z
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.34 |
| System mass | 60.21 kDa |
| Deposition year | 2018 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Didymium |
| RCSB PDB Entry | 6g7z |
| Reference | Meyer Mélanie, Walbott Hélène, Oliéric Vincent, Kondo Jiro, Costa Maria, Masquida Benoît. 2019. Conformational adaptation of UNCG loops upon crowding RNA |
| Equivalence Class |
NR_all_57460.6
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | MES |
| Residue | . / 201 |
| Chain | E / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/B: ribozyme |
| RNA family global | ribozyme |
| Volume | 130.34 Å3 |
| Hydrophobicity | 0.403 |
| Hydrophilicity | 0.918 |
| Buriedness | 0.691 |
| Don/acc character | 2.670 |
| SiteScore | 0.844 |
| D Score | 0.639 |
| Kd | — |