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Harnessing RIBOnucleic acid - Small molecules Structures

RNA-SM complexes

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1146 RNA-SM complexes found
Structure of complex 4e8k

4e8k

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate

SM: EPE EPE EPE EPE EPE SPM

Structure of complex 4e8m

4e8m

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+

SM: EPE EPE EPE EPE EPE SPM SPM

Structure of complex 4e8n

4e8n

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+

SM: EPE EPE SPM

Structure of complex 4e8p

4e8p

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+

SM: EPE EPE EPE EPE SPM

Structure of complex 4e8q

4e8q

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+

SM: EPE EPE EPE SPM

Structure of complex 4e8r

4e8r

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+

SM: EPE EPE EPE EPE

Structure of complex 4e8t

4e8t

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)

SM: EPE EPE EPE EPE EPE SPM SPM

Structure of complex 4e8v

4e8v

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+

SM: EPE EPE EPE EPE

Structure of complex 4f8u

4f8u

Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)

SM: SIS SIS

Structure of complex 4f8v

4f8v

Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)

SM: SIS SIS

Structure of complex 4faq

4faq

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon

SM: EPE EPE EPE EPE EPE SPM SPM

Structure of complex 4far

4far

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon

SM: EPE EPE EPE SPM SPM

Structure of complex 4fau

4fau

Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon

SM: EPE EPE EPE SPM

Structure of complex 4faw

4faw

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment

SM: EPE EPE SPM

Structure of complex 4fax

4fax

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+

SM: EPE EPE EPE

Structure of complex 4fb0

4fb0

Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+

SM: EPE EPE EPE EPE SPM

Structure of complex 4gkj

4gkj

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.

SM: PAR

Structure of complex 4gkk

4gkk

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin

SM: PAR

Structure of complex 4gpw

4gpw

Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)

SM: 6HS 6HS

Structure of complex 4gpx

4gpx

Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)

SM: 6HS 6HS

Structure of complex 4gpy

4gpy

Crystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicin

SM: 6HS 6HS

Structure of complex 4jf2

4jf2

Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold

SM: PRF

Structure of complex 4jya

4jya

Crystal structures of pseudouridinilated stop codons with ASLs

SM: PAR

Structure of complex 4k31

4k31

Crystal structure of apramycin bound to the leishmanial rRNA A-site

SM: AM2 AM2 AM2 AM2

Structure of complex 4k32

4k32

Crystal structure of geneticin bound to the leishmanial rRNA A-site

SM: GET GET

Structure of complex 4khp

4khp

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

SM: PAR PAR PAR PAR PAR PAR PAR PCY

Structure of complex 4kqy

4kqy

Bacillus subtilis yitJ S box/SAM-I riboswitch

SM: SAM

Structure of complex 4kzd

4kzd

Crystal structure of an RNA aptamer in complex with fluorophore and Fab

SM: 1TU

Structure of complex 4l47

4l47

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

SM: PAR PAR

Structure of complex 4l71

4l71

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

SM: PAR PAR

Structure of complex 4l81

4l81

Structure of the SAM-I/IV riboswitch (env87(deltaU92, deltaG93))

SM: SAM

Structure of complex 4lel

4lel

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome

SM: PAR PAR

Structure of complex 4lf4

4lf4

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

SM: LLL

Structure of complex 4lf5

4lf5

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

SM: HYG

Structure of complex 4lf6

4lf6

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

SM: NMY NMY NMY NMY NMY NMY

Structure of complex 4lf7

4lf7

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

SM: PAR PAR PAR PAR PAR PAR PAR PAR PAR

Structure of complex 4lf8

4lf8

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

SM: PAR PAR PAR PAR PAR PAR PAR PAR PAR

Structure of complex 4lf9

4lf9

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

SM: LLL

Structure of complex 4lfa

4lfa

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

SM: HYG

Structure of complex 4lfb

4lfb

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

SM: NMY NMY NMY

Structure of complex 4lfc

4lfc

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

SM: TOY

Structure of complex 4lnt

4lnt

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

SM: PAR PAR

Structure of complex 4lsk

4lsk

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

SM: PAR PAR

Structure of complex 4lt8

4lt8

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome

SM: PAR PAR

Structure of complex 4lvv

4lvv

Structure of the THF riboswitch

SM: FFO FFO

Structure of complex 4lvx

4lvx

Structure of the THF riboswitch bound to tetrahydrobiopterin

SM: H4B H4B

Structure of complex 4lvy

4lvy

Structure of the THF riboswitch bound to pemetrexed

SM: LYA LYA

Structure of complex 4lx5

4lx5

X-ray crystal structure of the M6" riboswitch aptamer bound to pyrimido[4,5-d]pyrimidine-2,4-diamine (PPDA)

SM: 29G

Structure of complex 4lx6

4lx6

X-ray crystal structure of the M6C" riboswitch aptamer bound to 2-aminopyrimido[4,5-d]pyrimidin-4(3H)-one (PPAO)

SM: 29H

Structure of complex 4nfo

4nfo

Crystal Structure Analysis of the 16mer GCAGACUUAAGUCUGC

SM: SPM

Structure of complex 4nya

4nya

Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine

SM: 2QB 2QB

Structure of complex 4nyb

4nyb

Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamine

SM: 2QC

Structure of complex 4nyg

4nyg

Crystal structure of the E. coli thiM riboswitch in complex with thiamine

SM: VIB

Structure of complex 4oqu

4oqu

Structure of the SAM-I/IV riboswitch (env87(deltaU92))

SM: SAM

Structure of complex 4p20

4p20

Crystal structures of the bacterial ribosomal decoding site complexed with amikacin

SM: AKN AKN

Structure of complex 4p3s

4p3s

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin

SM: GET GET GET

Structure of complex 4p5j

4p5j

Crystal structure of the tRNA-like structure from Turnip Yellow Mosaic Virus (TYMV), a tRNA mimicking RNA

SM: SPM

Structure of complex 4p6f

4p6f

Crystal structure of the peptolide 12C bound to bacterial ribosome

SM: PAR PAR

Structure of complex 4p70

4p70

Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome

SM: PAR PAR

Structure of complex 4pdq

4pdq

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analog

SM: NMZ