Complex 4lf8
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.15 |
| System mass | 795.24 kDa |
| Deposition year | 2013 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 4lf8 |
| Equivalence Class |
NR_all_65795.87
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | PAR |
| Residue | . / 1810 |
| Chain | WH / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 97.41 Å3 |
| Hydrophobicity | 0.120 |
| Hydrophilicity | 0.808 |
| Buriedness | 0.587 |
| Don/acc character | 3.986 |
| SiteScore | 0.821 |
| D Score | 0.645 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1811 |
| Chain | XH / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 138.23 Å3 |
| Hydrophobicity | 0.027 |
| Hydrophilicity | 1.523 |
| Buriedness | 0.735 |
| Don/acc character | 0.800 |
| SiteScore | 0.566 |
| D Score | 0.296 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1812 |
| Chain | YH / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 655.13 Å3 |
| Hydrophobicity | 0.160 |
| Hydrophilicity | 1.290 |
| Buriedness | 0.698 |
| Don/acc character | 0.992 |
| SiteScore | 1.000 |
| D Score | 0.939 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1813 |
| Chain | ZH / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 380.04 Å3 |
| Hydrophobicity | 0.076 |
| Hydrophilicity | 1.500 |
| Buriedness | 0.813 |
| Don/acc character | 1.350 |
| SiteScore | 0.986 |
| D Score | 0.629 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1814 |
| Chain | AI / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 95.01 Å3 |
| Hydrophobicity | 0.070 |
| Hydrophilicity | 1.067 |
| Buriedness | 0.735 |
| Don/acc character | 1.851 |
| SiteScore | 0.651 |
| D Score | 0.554 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1815 |
| Chain | BI / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 627.00 Å3 |
| Hydrophobicity | 0.032 |
| Hydrophilicity | 1.767 |
| Buriedness | 0.740 |
| Don/acc character | 0.718 |
| SiteScore | 1.028 |
| D Score | 0.808 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1816 |
| Chain | CI / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 46.31 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.121 |
| Buriedness | 0.508 |
| Don/acc character | 2.370 |
| SiteScore | 0.554 |
| D Score | 0.278 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1817 |
| Chain | DI / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 330.31 Å3 |
| Hydrophobicity | 0.068 |
| Hydrophilicity | 1.331 |
| Buriedness | 0.816 |
| Don/acc character | 1.126 |
| SiteScore | 0.919 |
| D Score | 0.790 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1818 |
| Chain | EI / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 258.62 Å3 |
| Hydrophobicity | 0.229 |
| Hydrophilicity | 1.199 |
| Buriedness | 0.790 |
| Don/acc character | 1.587 |
| SiteScore | 0.965 |
| D Score | 0.707 |
| Kd | — |