HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4f8v

System information

Experimental technique X-ray
Experimental resolution 2.80
System mass 14.38 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 4f8v
Reference Kondo Jiro, Koganei Mai, Kasahara Tomoko. . Crystal Structure and Specific Binding Mode of Sisomicin to the Bacterial Ribosomal Decoding Site ACS Medicinal Chemistry Letters

Compound SIS
Residue . / 101
Chain C / A
Non-redundant False
Interacting RNA chains B/B, A/A
Volume 77.17 Å3
Hydrophobicity 0.385
Hydrophilicity 0.785
Buriedness 0.548
Don/acc character 0.798
SiteScore 0.650
D Score 0.629

Compound SIS
Residue . / 101
Chain D / B
Non-redundant False
Interacting RNA chains B/B, A/A
Volume 57.97 Å3
Hydrophobicity 0.423
Hydrophilicity 0.862
Buriedness 0.566
Don/acc character 0.964
SiteScore 0.628
D Score 0.590