Complex 4p6f
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.60 |
| System mass | 4523.03 kDa |
| Deposition year | 2014 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 4p6f |
| Reference | Washington Arren Z., Benicewicz Derek B., Canzoneri Joshua C., Fagan Crystal E., Mwakwari Sandra C., Maehigashi Tatsuya, Dunham Christine M., Oyelere Adegboyega K.. 2014. Macrolide-Peptide Conjugates as Probes of the Path of Travel of the Nascent Peptides through the Ribosome ACS Chemical Biology |
| Equivalence Class |
NR_all_65795.87
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | PAR |
| Residue | . / 1667 |
| Chain | YF / QA |
| Non-redundant | True |
| Interacting RNA chains | A/QA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/QA: rRNA |
| RNA family global | rRNA |
| Volume | 446.59 Å3 |
| Hydrophobicity | 0.147 |
| Hydrophilicity | 1.013 |
| Buriedness | 0.675 |
| Don/acc character | 2.813 |
| SiteScore | 1.118 |
| D Score | 0.986 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1672 |
| Chain | XS / XA |
| Non-redundant | True |
| Interacting RNA chains | FB/XA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | FB/XA: rRNA |
| RNA family global | rRNA |
| Volume | 348.15 Å3 |
| Hydrophobicity | 0.131 |
| Hydrophilicity | 1.033 |
| Buriedness | 0.694 |
| Don/acc character | 3.875 |
| SiteScore | 1.051 |
| D Score | 0.894 |
| Kd | — |