HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4k31

System information

Experimental technique X-ray
Experimental resolution 1.42
System mass 16.87 kDa
Deposition year 2013
Molecule type RNA
# RNA entities 1
Organism Leishmania
RCSB PDB Entry 4k31
Reference Shalev Moran, Kondo Jiro, Kopelyanskiy Dmitry, Jaffe Charles L., Adir Noam, Baasov Timor. . Identification of the molecular attributes required for aminoglycoside activity against Leishmania Proceedings of the National Academy of Sciences

Compound AM2
Residue . / 101
Chain C / B
Non-redundant True
Interacting RNA chains A/B, B/C
Volume 217.46 Å3
Hydrophobicity 0.052
Hydrophilicity 1.059
Buriedness 0.621
Don/acc character 2.681
SiteScore 0.846
D Score 0.644

Compound AM2
Residue . / 102
Chain D / B
Non-redundant True
Interacting RNA chains A/B, B/C
Volume 506.61 Å3
Hydrophobicity 0.075
Hydrophilicity 1.324
Buriedness 0.729
Don/acc character 1.330
SiteScore 1.171
D Score 0.946

Compound AM2
Residue . / 101
Chain E / C
Non-redundant False
Interacting RNA chains A/B, B/C
Volume 489.80 Å3
Hydrophobicity 0.067
Hydrophilicity 1.307
Buriedness 0.729
Don/acc character 1.865
SiteScore 1.170
D Score 0.951

Compound AM2
Residue . / 102
Chain F / C
Non-redundant True
Interacting RNA chains A/B, B/C
Volume 216.78 Å3
Hydrophobicity 0.058
Hydrophilicity 1.031
Buriedness 0.625
Don/acc character 2.697
SiteScore 0.851
D Score 0.655