HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4gpw

System information

Experimental technique X-ray
Experimental resolution 3.00
System mass 15.67 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 4gpw
Reference Kondo Jiro, Koganei Mai, Maianti Juan Pablo, Ly Vu Linh, Hanessian Stephen. . Crystal Structures of a Bioactive 6′‐Hydroxy Variant of Sisomicin Bound to the Bacterial and Protozoal Ribosomal Decoding Sites ChemMedChem

Compound 6HS
Residue . / 101
Chain C / A
Non-redundant False
Interacting RNA chains A/A, B/B
Volume 86.09 Å3
Hydrophobicity 0.370
Hydrophilicity 0.969
Buriedness 0.617
Don/acc character 1.344
SiteScore 0.834
D Score 0.641

Compound 6HS
Residue . / 102
Chain D / A
Non-redundant False
Interacting RNA chains A/A, B/B
Volume 81.63 Å3
Hydrophobicity 0.054
Hydrophilicity 1.058
Buriedness 0.550
Don/acc character 1.335
SiteScore 0.770
D Score 0.565