HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4gpw

System information

Experimental technique X-ray
Experimental resolution 3.00
System mass 15.67 kDa
Deposition year 2012
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 4gpw
Reference Kondo Jiro, Koganei Mai, Maianti Juan Pablo, Ly Vu Linh, Hanessian Stephen. . Crystal Structures of a Bioactive 6′‐Hydroxy Variant of Sisomicin Bound to the Bacterial and Protozoal Ribosomal Decoding Sites ChemMedChem

Compound 6HS
Residue . / 101
Chain C / A
Non-redundant False
Interacting RNA chains B/B, A/A
Volume 86.09 Å3
Hydrophobicity 0.339
Hydrophilicity 1.031
Buriedness 0.616
Don/acc character 1.315
SiteScore 0.700
D Score 0.657

Compound 6HS
Residue . / 102
Chain D / A
Non-redundant False
Interacting RNA chains B/B, A/A
Volume 81.63 Å3
Hydrophobicity 0.034
Hydrophilicity 1.117
Buriedness 0.553
Don/acc character 1.244
SiteScore 0.650
D Score 0.584