Complex 4p3s
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.30 |
| System mass | 16.31 kDa |
| Deposition year | 2014 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 4p3s |
| Equivalence Class |
NR_all_71199.7
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | GET |
| Residue | . / 101 |
| Chain | C / A |
| Non-redundant | False |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA, B/B: rRNA |
| RNA family global | rRNA |
| Volume | 50.42 Å3 |
| Hydrophobicity | 0.246 |
| Hydrophilicity | 0.880 |
| Buriedness | 0.548 |
| Don/acc character | 2.477 |
| SiteScore | 0.793 |
| D Score | 0.614 |
| Kd | — |
| Compound | GET |
| Residue | . / 102 |
| Chain | D / A |
| Non-redundant | False |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA, B/B: rRNA |
| RNA family global | rRNA |
| Volume | 87.47 Å3 |
| Hydrophobicity | 0.224 |
| Hydrophilicity | 0.764 |
| Buriedness | 0.571 |
| Don/acc character | 3.228 |
| SiteScore | 0.787 |
| D Score | 0.609 |
| Kd | — |
| Compound | GET |
| Residue | . / 103 |
| Chain | E / A |
| Non-redundant | False |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA, B/B: rRNA |
| RNA family global | rRNA |
| Volume | 53.17 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.019 |
| Buriedness | 0.629 |
| Don/acc character | 0.771 |
| SiteScore | 0.669 |
| D Score | 0.422 |
| Kd | — |