Complex 4p20
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.70 |
| System mass | 15.88 kDa |
| Deposition year | 2014 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 4p20 |
| Reference | KONDO J, FRANCOIS B, RUSSELL R, MURRAY J, WESTHOF E. . Crystal structure of the bacterial ribosomal decoding site complexed with amikacin containing the γ-amino-α-hydroxybutyryl (haba) group Biochimie |
| Equivalence Class |
NR_all_71199.7
BGSU version: 4.48 |
| Compound | AKN |
| Residue | . / 101 |
| Chain | C / A |
| Non-redundant | True |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA, B/B: rRNA |
| RNA family global | rRNA |
| Volume | 105.30 Å3 |
| Hydrophobicity | 0.165 |
| Hydrophilicity | 0.798 |
| Buriedness | 0.553 |
| Don/acc character | 3.933 |
| SiteScore | 0.842 |
| D Score | 0.681 |
| Kd | — |
| Compound | AKN |
| Residue | . / 101 |
| Chain | D / B |
| Non-redundant | True |
| Interacting RNA chains | B/B, A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA, B/B: rRNA |
| RNA family global | rRNA |
| Volume | 90.21 Å3 |
| Hydrophobicity | 0.138 |
| Hydrophilicity | 0.825 |
| Buriedness | 0.549 |
| Don/acc character | 3.262 |
| SiteScore | 0.760 |
| D Score | 0.575 |
| Kd | — |