HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4p20

System information

Experimental technique X-ray
Experimental resolution 2.70
System mass 15.88 kDa
Deposition year 2014
Molecule type RNA
# RNA entities 1
Organism N/A
RCSB PDB Entry 4p20
Reference KONDO J, FRANCOIS B, RUSSELL R, MURRAY J, WESTHOF E. . Crystal structure of the bacterial ribosomal decoding site complexed with amikacin containing the γ-amino-α-hydroxybutyryl (haba) group Biochimie

Compound AKN
Residue . / 101
Chain C / A
Non-redundant True
Interacting RNA chains A/A, B/B
Volume 104.27 Å3
Hydrophobicity 0.177
Hydrophilicity 0.819
Buriedness 0.554
Don/acc character 4.298
SiteScore 0.694
D Score 0.682

Compound AKN
Residue . / 101
Chain D / B
Non-redundant True
Interacting RNA chains A/A, B/B
Volume 89.18 Å3
Hydrophobicity 0.091
Hydrophilicity 0.830
Buriedness 0.535
Don/acc character 3.190
SiteScore 0.613
D Score 0.582